A landscape of genomic alterations at the root of a near-untreatable tuberculosis epidemic
Published 2020 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
A landscape of genomic alterations at the root of a near-untreatable tuberculosis epidemic
Authors
Keywords
-
Journal
BMC Medicine
Volume 18, Issue 1, Pages -
Publisher
Springer Science and Business Media LLC
Online
2020-02-04
DOI
10.1186/s12916-019-1487-2
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Efficacy and safety of delamanid in combination with an optimised background regimen for treatment of multidrug-resistant tuberculosis: a multicentre, randomised, double-blind, placebo-controlled, parallel group phase 3 trial
- (2019) Florian von Groote-Bidlingmaier et al. Lancet Respiratory Medicine
- Emergence of low level delamanid and bedaquiline resistance during extremely drug resistant tuberculosis treatment
- (2019) S Polsfuss et al. CLINICAL INFECTIOUS DISEASES
- The molecular clock of Mycobacterium tuberculosis
- (2019) Fabrizio Menardo et al. PLoS Pathogens
- A cluster of multidrug-resistant Mycobacterium tuberculosis among patients arriving in Europe from the Horn of Africa: a molecular epidemiological study
- (2018) Timothy M Walker et al. LANCET INFECTIOUS DISEASES
- Genome-wide analysis of multi- and extensively drug-resistant Mycobacterium tuberculosis
- (2018) Francesc Coll et al. NATURE GENETICS
- ModelFinder: fast model selection for accurate phylogenetic estimates
- (2017) Subha Kalyaanamoorthy et al. NATURE METHODS
- Outcomes, infectiousness, and transmission dynamics of patients with extensively drug-resistant tuberculosis and home-discharged patients with programmatically incurable tuberculosis: a prospective cohort study
- (2017) Keertan Dheda et al. Lancet Respiratory Medicine
- Evolutionary pathway analysis and unified classification of East Asian lineage of Mycobacterium tuberculosis
- (2017) Egor Shitikov et al. Scientific Reports
- ggtree: anrpackage for visualization and annotation of phylogenetic trees with their covariates and other associated data
- (2016) Guangchuang Yu et al. Methods in Ecology and Evolution
- Whole genome sequencing reveals genomic heterogeneity and antibiotic purification in Mycobacterium tuberculosis isolates
- (2015) PA Black et al. BMC GENOMICS
- Evolutionary history and global spread of the Mycobacterium tuberculosis Beijing lineage
- (2015) Matthias Merker et al. NATURE GENETICS
- Rapid determination of anti-tuberculosis drug resistance from whole-genome sequences
- (2015) Francesc Coll et al. Genome Medicine
- Evolution of Extensively Drug-Resistant Tuberculosis over Four Decades: Whole Genome Sequencing and Dating Analysis of Mycobacterium tuberculosis Isolates from KwaZulu-Natal
- (2015) Keira A. Cohen et al. PLOS MEDICINE
- Trimmomatic: a flexible trimmer for Illumina sequence data
- (2014) Anthony M. Bolger et al. BIOINFORMATICS
- Mycobacterium tuberculosis Strains of the Modern Sublineage of the Beijing Family Are More Likely To Display Increased Virulence than Strains of the Ancient Sublineage
- (2014) S. C. M. Ribeiro et al. JOURNAL OF CLINICAL MICROBIOLOGY
- IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies
- (2014) Lam-Tung Nguyen et al. MOLECULAR BIOLOGY AND EVOLUTION
- Acquired Resistance of Mycobacterium tuberculosis to Bedaquiline
- (2014) Koen Andries et al. PLoS One
- Mycobacterium tuberculosis strains spreading in Hanoi, Vietnam: Beijing sublineages, genotypes, drug susceptibility patterns, and host factors
- (2014) Shinji Maeda et al. TUBERCULOSIS
- A robust SNP barcode for typing Mycobacterium tuberculosis complex strains
- (2014) Francesc Coll et al. Nature Communications
- Global control of tuberculosis: from extensively drug-resistant to untreatable tuberculosis
- (2014) Keertan Dheda et al. Lancet Respiratory Medicine
- Epidemic Spread of Multidrug-Resistant Tuberculosis in Johannesburg, South Africa
- (2013) B. J. Marais et al. JOURNAL OF CLINICAL MICROBIOLOGY
- Whole Genome Sequencing versus Traditional Genotyping for Investigation of a Mycobacterium tuberculosis Outbreak: A Longitudinal Molecular Epidemiological Study
- (2013) Andreas Roetzer et al. PLOS MEDICINE
- Putative Compensatory Mutations in the rpoC Gene of Rifampin-Resistant Mycobacterium tuberculosis Are Associated with Ongoing Transmission
- (2012) M. de Vos et al. ANTIMICROBIAL AGENTS AND CHEMOTHERAPY
- SpolPred: rapid and accurate prediction of Mycobacterium tuberculosis spoligotypes from short genomic sequences
- (2012) Francesc Coll et al. BIOINFORMATICS
- Predicting the Functional Effect of Amino Acid Substitutions and Indels
- (2012) Yongwook Choi et al. PLoS One
- Mutations ingidBConfer Low-Level Streptomycin Resistance in Mycobacterium tuberculosis
- (2011) Sharon Y. Wong et al. ANTIMICROBIAL AGENTS AND CHEMOTHERAPY
- Totally Drug-Resistant Tuberculosis in India
- (2011) Z. F. Udwadia et al. CLINICAL INFECTIOUS DISEASES
- High-resolution MIRU-VNTRs typing reveals the unique nature of Mycobacterium tuberculosis Beijing genotype in Okinawa, Japan
- (2011) Julie Millet et al. INFECTION GENETICS AND EVOLUTION
- Population Structure of Multi- and Extensively Drug-Resistant Mycobacterium tuberculosis Strains in South Africa
- (2011) V. N. Chihota et al. JOURNAL OF CLINICAL MICROBIOLOGY
- GenomeView: a next-generation genome browser
- (2011) T. Abeel et al. NUCLEIC ACIDS RESEARCH
- The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data
- (2010) A. McKenna et al. GENOME RESEARCH
- Emerging multidrug resistant Mycobacterium tuberculosis strains of the Beijing genotype circulating in Russia express a pattern of biological properties associated with enhanced virulence
- (2010) Elena Lasunskaia et al. MICROBES AND INFECTION
- TubercuList – 10 years after
- (2010) Jocelyne M. Lew et al. TUBERCULOSIS
- Fast and accurate short read alignment with Burrows-Wheeler transform
- (2009) H. Li et al. BIOINFORMATICS
- Emergence of New Forms of Totally Drug-Resistant Tuberculosis Bacilli
- (2009) Ali Akbar Velayati et al. CHEST
- Quantitative Drug Susceptibility Testing of Mycobacterium tuberculosis by Use of MGIT 960 and EpiCenter Instrumentation
- (2009) B. Springer et al. JOURNAL OF CLINICAL MICROBIOLOGY
- Population Structure Analysis of the Mycobacterium tuberculosis Beijing Family Indicates an Association between Certain Sublineages and Multidrug Resistance
- (2008) T. Iwamoto et al. ANTIMICROBIAL AGENTS AND CHEMOTHERAPY
- Artemis and ACT: viewing, annotating and comparing sequences stored in a relational database
- (2008) Tim Carver et al. BIOINFORMATICS
Find Funding. Review Successful Grants.
Explore over 25,000 new funding opportunities and over 6,000,000 successful grants.
ExploreCreate your own webinar
Interested in hosting your own webinar? Check the schedule and propose your idea to the Peeref Content Team.
Create Now