High-throughput quantification of protein structural change reveals potential mechanisms of temperature adaptation in Mytilus mussels

Present and Future Adaptation of Marine Species Assemblages: DNA-Based Insights into Climate Change from Studies of Physiology, Genomics, and Evolution

(2019) Stephen Palumbi et al.   OCEANOGRAPHY

Principles of Protein Stability and Their Application in Computational Design

(2018) Adi Goldenzweig et al.   Annual Review of Biochemistry

SWISS-MODEL: homology modelling of protein structures and complexes

(2018) Andrew Waterhouse et al.   NUCLEIC ACIDS RESEARCH

Structural flexibility and protein adaptation to temperature: Molecular dynamics analysis of malate dehydrogenases of marine molluscs

(2018) Yun-wei Dong et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The more adaptive to change, the more likely you are to survive: Protein adaptation in extremophiles

(2018) C. Brininger et al.   SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY

Biophysical experiments and biomolecular simulations: A perfect match?

(2018) Sandro Bottaro et al.   SCIENCE

The Gene Ontology Resource: 20 years and still GOing strong

(2018)   NUCLEIC ACIDS RESEARCH

Comparing mutagenesis and simulations as tools for identifying functionally important sequence changes for protein thermal adaptation

(2018) Ming-ling Liao et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Sequence-Based Analysis of Thermal Adaptation and Protein Energy Landscapes in an Invasive Blue Mussel (Mytilus galloprovincialis)

(2017) Norah P. Saarman et al.   Genome Biology and Evolution

Heat-resistant cytosolic malate dehydrogenases (cMDHs) of thermophilic intertidal snails (genusEchinolittorina): protein underpinnings of tolerance to body temperatures reaching 55°C

(2017) Ming-ling Liao et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

UniProt: the universal protein knowledgebase

(2016)   NUCLEIC ACIDS RESEARCH

Improved insights into protein thermal stability: from the molecular to the structurome scale

(2016) Fabrizio Pucci et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY A-MATHEMATICAL PHYSICAL AND ENGINEERING SCIENCES

A First Insight into the Genome of the Filter-Feeder Mussel Mytilus galloprovincialis

(2016) Maria Murgarella et al.   PLoS One

Oligomerization as a strategy for cold adaptation: Structure and dynamics of the GH1 β-glucosidase from Exiguobacterium antarcticum B7

(2016) Leticia Maria Zanphorlin et al.   Scientific Reports

The complexity of apoptotic cell death in mollusks: An update

(2015) A. Romero et al.   FISH & SHELLFISH IMMUNOLOGY

Adaptations of protein structure and function to temperature: there is more than one way to 'skin a cat'

(2015) P. A. Fields et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

Proteomic responses to environmentally induced oxidative stress

(2015) L. Tomanek   JOURNAL OF EXPERIMENTAL BIOLOGY

Cell Death Signaling

(2015) Douglas R. Green et al.   Cold Spring Harbor Perspectives in Biology

The Hydrophobic Temperature Dependence of Amino Acids Directly Calculated from Protein Structures

(2015) Erik van Dijk et al.   PLoS Computational Biology

Biophysics of protein evolution and evolutionary protein biophysics

(2014) T. Sikosek et al.   Journal of the Royal Society Interface

SWISS-MODEL: modelling protein tertiary and quaternary structure using evolutionary information

(2014) Marco Biasini et al.   NUCLEIC ACIDS RESEARCH

Occurrence of protein disulfide bonds in different domains of life: a comparison of proteins from the Protein Data Bank

(2014) I. Bosnjak et al.   PROTEIN ENGINEERING DESIGN & SELECTION

Genes of the Mitochondrial Apoptotic Pathway in Mytilus galloprovincialis

(2013) Noelia Estévez-Calvar et al.   PLoS One

Understanding Thermal Adaptation of Enzymes through the Multistate Rational Design and Stability Prediction of 100 Adenylate Kinases

(2013) Stanley C. Howell et al.   STRUCTURE

Environmental Proteomics of the Mussel Mytilus: Implications for Tolerance to Stress and Change in Limits of Biogeographic Ranges in Response to Climate Change

(2012) L. Tomanek   INTEGRATIVE AND COMPARATIVE BIOLOGY

The impact of acute temperature stress on hemocytes of invasive and native mussels (Mytilus galloprovincialis and Mytilus californianus): DNA damage, membrane integrity, apoptosis and signaling pathways

(2012) C.-L. Yao et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

Functional Determinants of Temperature Adaptation in Enzymes of Cold- versus Warm-Adapted Mussels (Genus Mytilus)

(2012) B. L. Lockwood et al.   MOLECULAR BIOLOGY AND EVOLUTION

Comparative physiology: a “crystal ball” for predicting consequences of global change

(2011) George N. Somero   AMERICAN JOURNAL OF PHYSIOLOGY-REGULATORY INTEGRATIVE AND COMPARATIVE PHYSIOLOGY

Caspase Substrates and Cellular Remodeling

(2011) Emily D. Crawford et al.   Annual Review of Biochemistry

The Physiology of Global Change: Linking Patterns to Mechanisms

(2011) George N. Somero   Annual Review of Marine Science

Invasive and native blue mussels (genus Mytilus) on the California coast: The role of physiology in a biological invasion

(2011) Brent L. Lockwood et al.   JOURNAL OF EXPERIMENTAL MARINE BIOLOGY AND ECOLOGY

Contribution of Hydrophobic Interactions to Protein Stability

(2011) C. Nick Pace et al.   JOURNAL OF MOLECULAR BIOLOGY

New Insights into the Apoptotic Process in Mollusks: Characterization of Caspase Genes in Mytilus galloprovincialis

(2011) Alejandro Romero et al.   PLoS One

Inversion of the Balance between Hydrophobic and Hydrogen Bonding Interactions in Protein Folding and Aggregation

(2011) Anthony W. Fitzpatrick et al.   PLoS Computational Biology

The proteomic response of the mussel congeners Mytilus galloprovincialis and M. trossulus to acute heat stress: implications for thermal tolerance limits and metabolic costs of thermal stress

(2010) L. Tomanek et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

Transcriptomic responses to heat stress in invasive and native blue mussels (genus Mytilus): molecular correlates of invasive success

(2010) B. L. Lockwood et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

Protein stability and enzyme activity at extreme biological temperatures

(2010) Georges Feller   JOURNAL OF PHYSICS-CONDENSED MATTER

Thermophilic Adaptation of Protein Complexes Inferred from Proteomic Homology Modeling

(2010) Bin-Guang Ma et al.   STRUCTURE

p63 in Mytilus galloprovincialis and p53 family members in the phylum Mollusca

(2009) Mauro Štifanić et al.   COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY B-BIOCHEMISTRY & MOLECULAR BIOLOGY

Sequence-Based Analysis of Protein Energy Landscapes Reveals Nonuniform Thermal Adaptation within the Proteome

(2009) J. Gu et al.   MOLECULAR BIOLOGY AND EVOLUTION

Amino acid contacts in proteins adapted to different temperatures: hydrophobic interactions and surface charges play a key role

(2008) Gisle Sælensminde et al.   EXTREMOPHILES

Temperature adaptation of cytosolic malate dehydrogenases of limpets (genus Lottia): differences in stability and function due to minor changes in sequence correlate with biogeographic and vertical distributions

(2008) Y. Dong et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

Invertebrate p53-like mRNA isoforms are differentially expressed in mussel haemic neoplasia

(2008) Annette F. Muttray et al.   MARINE ENVIRONMENTAL RESEARCH

Molecular signature of hypersaline adaptation: insights from genome and proteome composition of halophilic prokaryotes

(2008) Sandip Paul et al.   GENOME BIOLOGY

QMEAN: A comprehensive scoring function for model quality assessment

(2007) Pascal Benkert et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS