Analyses on clustering of the conserved residues at protein-RNA interfaces and its application in binding site identification

Comprehensive genomic analysis of the DUF4228 gene family in land plants and expression profiling of ATDUF4228 under abiotic stresses

(2020) Qi Yang et al.   BMC GENOMICS

FunFam protein families improve residue level molecular function prediction

(2019) Linus Scheibenreif et al.   BMC BIOINFORMATICS

Human protein-RNA interaction network is highly stable across mammals

(2019) Aarthi Ramakrishnan et al.   BMC GENOMICS

dbAMEPNI: a database of alanine mutagenic effects for protein–nucleic acid interactions

(2018) Ling Liu et al.   Database-The Journal of Biological Databases and Curation

A combinatorial scoring function for protein-RNA docking

(2017) Zhao Zhang et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Probing binding hot spots at protein–RNA recognition sites

(2015) Amita Barik et al.   NUCLEIC ACIDS RESEARCH

A census of human RNA-binding proteins

(2014) Stefanie Gerstberger et al.   NATURE REVIEWS GENETICS

Dynamics in multi-domain protein recognition of RNA

(2012) Cameron D Mackereth et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

A new residue-nucleotide propensity potential with structural information considered for discriminating protein-RNA docking decoys

(2011) Chun Hua Li et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Conserved residue clusters at protein-protein interfaces and their use in binding site identification

(2010) Mainak Guharoy et al.   BMC BIOINFORMATICS

CCRXP: exploring clusters of conserved residues in protein structures

(2010) Shandar Ahmad et al.   NUCLEIC ACIDS RESEARCH

Empirical estimation of the energetic contribution of individual interface residues in structures of protein–protein complexes

(2009) Mainak Guharoy et al.   JOURNAL OF COMPUTER-AIDED MOLECULAR DESIGN

Dissecting protein–RNA recognition sites

(2008) Ranjit Prasad Bahadur et al.   NUCLEIC ACIDS RESEARCH

Protein–DNA interactions: structural, thermodynamic and clustering patterns of conserved residues in DNA-binding proteins

(2008) Shandar Ahmad et al.   NUCLEIC ACIDS RESEARCH