Multimodal deep representation learning for protein interaction identification and protein family classification

Near perfect protein multi-label classification with deep neural networks

(2018) Balázs Szalkai et al.   METHODS

Predicting human protein function with multi-task deep neural networks

(2018) Rui Fa et al.   PLoS One

Predicting Protein Functions by Using Unbalanced Random Walk Algorithm on Three Biological Networks

(2017) Wei Peng et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics

DeepPPI: Boosting Prediction of Protein–Protein Interactions with Deep Neural Networks

(2017) Xiuquan Du et al.   Journal of Chemical Information and Modeling

HIPPI: highly accurate protein family classification with ensembles of HMMs

(2016) Nam-phuong Nguyen et al.   BMC GENOMICS

Detection of Interactions between Proteins through Rotation Forest and Local Phase Quantization Descriptors

(2015) Leon Wong et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Prediction of protein-protein interactions from amino acid sequences using a novel multi-scale continuous and discontinuous feature set

(2014) Zhu-Hong You et al.   BMC BIOINFORMATICS

Ensemble learning prediction of protein–protein interactions using proteins functional annotations

(2014) Indrajit Saha et al.   Molecular BioSystems

Exploiting maximal dependence decomposition to identify conserved motifs from a group of aligned signal sequences

(2011) Tzong-Yi Lee et al.   BIOINFORMATICS

Protein sequences classification by means of feature extraction with substitution matrices

(2010) Rabie Saidi et al.   BMC BIOINFORMATICS

Large-Scale Prediction of Human Protein−Protein Interactions from Amino Acid Sequence Based on Latent Topic Features

(2010) Xiao-Yong Pan et al.   JOURNAL OF PROTEOME RESEARCH

Prediction of Protein-Protein Interactions from Protein Sequence Using Local Descriptors

(2010) Lei Yang et al.   PROTEIN AND PEPTIDE LETTERS

Using support vector machine combined with auto covariance to predict protein–protein interactions from protein sequences

(2008) Yanzhi Guo et al.   NUCLEIC ACIDS RESEARCH