Identification of nuclear genes controlling chlorophyll synthesis in barley by RNA-seq

Complementary transcriptomic and proteomic analyses of a chlorophyll-deficient tea plant cultivar reveal multiple metabolic pathway changes

(2016) Lu Wang et al.   Journal of Proteomics

An overview of pentatricopeptide repeat proteins and their applications

(2015) Sam Manna   BIOCHIMIE

Metabolites and chloroplast retrograde signaling

(2015) Wei Chi et al.   CURRENT OPINION IN PLANT BIOLOGY

Chloroplast signaling within, between and beyond cells

(2015) Krzysztof Bobik et al.   Frontiers in Plant Science

Identification and Expression Analysis of the Barley (Hordeum vulgare L.) Aquaporin Gene Family

(2015) Runyararo M. Hove et al.   PLoS One

Transcriptome sequencing of two wild barley (Hordeum spontaneum L.) ecotypes differentially adapted to drought stress reveals ecotype-specific transcripts

(2014) Girma Bedada et al.   BMC GENOMICS

Characterization of the lipoxygenase (LOX) gene family in the Chinese white pear (Pyrus bretschneideri) and comparison with other members of the Rosaceae

(2014) Meng Li et al.   BMC GENOMICS

Current applications of wheat and wheat–alien precise genetic stocks

(2014) Elena K. Khlestkina   MOLECULAR BREEDING

PECTIN METHYLESTERASE48 Is Involved in Arabidopsis Pollen Grain Germination

(2014) Christelle Leroux et al.   PLANT PHYSIOLOGY

Transcriptome profiling reveals mosaic genomic origins of modern cultivated barley

(2014) Fei Dai et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Recent advances in the study of chloroplast gene expression and its evolution

(2014) Yusuke Yagi et al.   Frontiers in Plant Science

Transcriptome analysis of heat stress response in switchgrass (Panicum virgatum L.)

(2013) Yong-Fang Li et al.   BMC PLANT BIOLOGY

Integrated Analysis of Transcriptomic and Proteomic Data

(2013) Saad Haider et al.   CURRENT GENOMICS

Molecular Modeling and Ligand Docking for Solute Carrier (SLC) Transporters

(2013) Avner Schlessinger et al.   CURRENT TOPICS IN MEDICINAL CHEMISTRY

A Sequence-Ready Physical Map of Barley Anchored Genetically by Two Million Single-Nucleotide Polymorphisms

(2013) R. Ariyadasa et al.   PLANT PHYSIOLOGY

Unusual Small Subunit That Is Not Expressed in Photosynthetic Cells Alters the Catalytic Properties of Rubisco in Rice

(2013) K. Morita et al.   PLANT PHYSIOLOGY

Structural representative of the protein family PF14466 has a new fold and establishes links with the C2 and PLAT domains from the widely distant Pfams PF00168 and PF01477

(2013) Pedro Serrano et al.   PROTEIN SCIENCE

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

(2013) Daehwan Kim et al.   GENOME BIOLOGY

STAR: ultrafast universal RNA-seq aligner

(2012) Alexander Dobin et al.   BIOINFORMATICS

Transcriptome response analysis of Arabidopsis thaliana to leafminer (Liriomyza huidobrensis)

(2012) Sufang Zhang et al.   BMC PLANT BIOLOGY

The Primary Transcriptome of Barley Chloroplasts: Numerous Noncoding RNAs and the Dominating Role of the Plastid-Encoded RNA Polymerase

(2012) P. Zhelyazkova et al.   PLANT CELL

Arabidopsis MDA1, a Nuclear-Encoded Protein, Functions in Chloroplast Development and Abiotic Stress Responses

(2012) Pedro Robles et al.   PLoS One

Phytochrome regulates translation of mRNA in the cytosol

(2012) I. Paik et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The role of the xanthophyll cycle and of lutein in photoprotection of photosystem II

(2011) Peter Jahns et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS

Quality control and preprocessing of metagenomic datasets

(2011) R. Schmieder et al.   BIOINFORMATICS

De novo sequencing and characterization of floral transcriptome in two species of buckwheat (Fagopyrum)

(2011) Maria D Logacheva et al.   BMC GENOMICS

Proteomic comparison of etioplast and chloroplast protein complexes

(2011) Matthias Plöscher et al.   Journal of Proteomics

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

Plastid Biotechnology: Food, Fuel, and Medicine for the 21st Century

(2011) P. Maliga et al.   PLANT PHYSIOLOGY

Protein Transport into Chloroplasts

(2010) Hsou-min Li et al.   Annual Review of Plant Biology

BEDTools: a flexible suite of utilities for comparing genomic features

(2010) Aaron R. Quinlan et al.   BIOINFORMATICS

Transcriptome sequencing in an ecologically important tree species: assembly, annotation, and marker discovery

(2010) Thomas L Parchman et al.   BMC GENOMICS

Arabidopsis HEMERA/pTAC12 Initiates Photomorphogenesis by Phytochromes

(2010) Meng Chen et al.   CELL

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

(2010) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

agriGO: a GO analysis toolkit for the agricultural community

(2010) Zhou Du et al.   NUCLEIC ACIDS RESEARCH

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

BLAST+: architecture and applications

(2009) Christiam Camacho et al.   BMC BIOINFORMATICS

Chloroplast Proteomics and the Compartmentation of Plastidial Isoprenoid Biosynthetic Pathways

(2009) Jacques Joyard et al.   Molecular Plant