ImPLoc: a multi-instance deep learning model for the prediction of protein subcellular localization based on immunohistochemistry images

PSMD4 is a novel therapeutic target in chemoresistant colorectal cancer activated by cytoplasmic localization of Nrf2

(2018) Ya-Min Cheng et al.   Oncotarget

AnnoFly: Annotating Drosophila Embryonic Images Based on an Attention-Enhanced RNN Model

(2018) Yang Yang et al.   BIOINFORMATICS

A subcellular map of the human proteome

(2017) Peter J. Thul et al.   SCIENCE

Widespread Post-transcriptional Attenuation of Genomic Copy-Number Variation in Cancer

(2017) Emanuel Gonçalves et al.   Cell Systems

Cytoplasmic localization of Nrf2 promotes colorectal cancer with more aggressive tumors via upregulation of PSMD4

(2016) Po-Lin Lin et al.   FREE RADICAL BIOLOGY AND MEDICINE

Hypoxia-induced expression of phosducin-like 3 regulates expression of VEGFR-2 and promotes angiogenesis

(2015) Srimathi Srinivasan et al.   ANGIOGENESIS

Tissue-based map of the human proteome

(2015) M. Uhlen et al.   SCIENCE

Automated analysis of immunohistochemistry images identifies candidate location biomarkers for cancers

(2014) Aparna Kumar et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

An image-based multi-label human protein subcellular localization predictor (iLocator) reveals protein mislocalizations in cancer tissues

(2013) Ying-Ying Xu et al.   BIOINFORMATICS

WegoLoc: accurate prediction of protein subcellular localization using weighted Gene Ontology terms

(2012) S.-M. Chi et al.   BIOINFORMATICS

Multi-instance multi-label learning

(2011) Zhi-Hua Zhou et al.   ARTIFICIAL INTELLIGENCE

Protein localization in disease and therapy

(2011) M.-C. Hung et al.   JOURNAL OF CELL SCIENCE

A review of multi-instance learning assumptions

(2010) James Foulds et al.   KNOWLEDGE ENGINEERING REVIEW

Epigenetic up-regulation of leukemia inhibitory factor (LIF) gene during the progression to breast cancer

(2010) Jung Eun Shin et al.   MOLECULES AND CELLS

Towards a knowledge-based Human Protein Atlas

(2010) Mathias Uhlen et al.   NATURE BIOTECHNOLOGY

YLoc—an interpretable web server for predicting subcellular localization

(2010) Sebastian Briesemeister et al.   NUCLEIC ACIDS RESEARCH

A Framework for the Automated Analysis of Subcellular Patterns in Human Protein Atlas Images

(2008) Justin Newberg et al.   JOURNAL OF PROTEOME RESEARCH