High-throughput sequencing of 16S rRNA Gene Reveals Substantial Bacterial Diversity on the Municipal Dumpsite

Characterization of the Fecal Microbial Communities of Duroc Pigs Using 16S rRNA Gene Pyrosequencing

(2015) Edward Alain B. Pajarillo et al.   ASIAN-AUSTRALASIAN JOURNAL OF ANIMAL SCIENCES

Remediation of cyanide from the gold mine tailing pond by a novel bacterial co-culture

(2015) Z. Khamar et al.   INTERNATIONAL BIODETERIORATION & BIODEGRADATION

Sumoylation controls host anti-bacterial response to the gut invasive pathogen Shigella flexneri

(2014) S. Fritah et al.   EMBO REPORTS

Globally Expanding Carbapenemase Finally Appears in Spain: Nosocomial Outbreak of Acinetobacter baumannii Producing Plasmid-Encoded OXA-23 in Barcelona, Spain

(2013) Noraida Mosqueda et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

First Report of OXA-23-Mediated Carbapenem Resistance in Sequence Type 2 Multidrug-Resistant Acinetobacter baumannii Associated with Urinary Tract Infection in a Cat

(2013) Constança Pomba et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Characterization of Halomonas sp. ZM3 isolated from the Zelazny Most post-flotation waste reservoir, with a special focus on its mobile DNA

(2013) Lukasz Dziewit et al.   BMC MICROBIOLOGY

Zoonotic Enterohemorrhagic Escherichia coli: A One Health Perspective

(2013) A. Garcia et al.   ILAR JOURNAL

Spread of multidrug-resistant Enterococcus to animals and humans: an underestimated role for the pig farm environment

(2013) C. Novais et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

Ribosomal Database Project: data and tools for high throughput rRNA analysis

(2013) James R. Cole et al.   NUCLEIC ACIDS RESEARCH

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

Emergence of Epidemic Multidrug-Resistant Enterococcus faecium from Animal and Commensal Strains

(2013) F. Lebreton et al.   mBio

Infectious Risk Assessment of Unsafe Handling Practices and Management of Clinical Solid Waste

(2013) Md. Hossain et al.   International Journal of Environmental Research and Public Health

Bioremediation of strontium (Sr) contaminated aquifer quartz sand based on carbonate precipitation induced by Sr resistant Halomonas sp.

(2012) Varenyam Achal et al.   CHEMOSPHERE

Global evolution of multidrug-resistant Acinetobacter baumannii clonal lineages

(2012) Raffaele Zarrilli et al.   INTERNATIONAL JOURNAL OF ANTIMICROBIAL AGENTS

The rise of the Enterococcus: beyond vancomycin resistance

(2012) Cesar A. Arias et al.   NATURE REVIEWS MICROBIOLOGY

METAGENassist: a comprehensive web server for comparative metagenomics

(2012) D. Arndt et al.   NUCLEIC ACIDS RESEARCH

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

Assessment of Microbial Diversity in Biofilms Recovered from Endotracheal Tubes Using Culture Dependent and Independent Approaches

(2012) Ilse Vandecandelaere et al.   PLoS One

Comparison of the Fecal Microbiota of Healthy Horses and Horses with Colitis by High Throughput Sequencing of the V3-V5 Region of the 16S rRNA Gene

(2012) Marcio C. Costa et al.   PLoS One

The Fecal Microbiome in Dogs with Acute Diarrhea and Idiopathic Inflammatory Bowel Disease

(2012) Jan S. Suchodolski et al.   PLoS One

Solid waste management challenges for cities in developing countries

(2012) Lilliana Abarca Guerrero et al.   WASTE MANAGEMENT

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

Analysis of 16S rRNA environmental sequences using MEGAN

(2011) Suparna Mitra et al.   BMC GENOMICS

Massively parallel rRNA gene sequencing exacerbates the potential for biased community diversity comparisons due to variable library sizes

(2011) Thomas M. Gihring et al.   ENVIRONMENTAL MICROBIOLOGY

Municipal solid waste generation in growing urban areas in Africa: current practices and relation to socioeconomic factors in Jimma, Ethiopia

(2011) T. Getahun et al.   ENVIRONMENTAL MONITORING AND ASSESSMENT

Characterization of the fecal bacteria communities of forage-fed horses by pyrosequencing of 16S rRNA V4 gene amplicons

(2011) Megan L. Shepherd et al.   FEMS MICROBIOLOGY LETTERS

Characterization of plasmids encoding extended-spectrum  -lactamases and their addiction systems circulating among Escherichia coli clinical isolates in the UK

(2011) M. Doumith et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

Draft Genome Sequence of Halomonas sp. Strain HAL1, a Moderately Halophilic Arsenite-Oxidizing Bacterium Isolated from Gold-Mine Soil

(2011) Y. Lin et al.   JOURNAL OF BACTERIOLOGY

Human and Swine Hosts Share Vancomycin-Resistant Enterococcus faecium CC17 and CC5 and Enterococcus faecalis CC2 Clonal Clusters Harboring Tn1546 on Indistinguishable Plasmids

(2011) A. R. Freitas et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Survival of faecal indicator bacteria in treated pig manure stored in clay-covered heaps in Vietnam

(2011) Son Thi Thanh Dang et al.   VETERINARY MICROBIOLOGY

Metagenomic Analyses: Past and Future Trends

(2010) Carola Simon et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Phylogenetic Characterization of Fecal Microbial Communities of Dogs Fed Diets with or without Supplemental Dietary Fiber Using 454 Pyrosequencing

(2010) Ingmar S. Middelbos et al.   PLoS One

Characterization of the Fecal Microbiome from Non-Human Wild Primates Reveals Species Specific Microbial Communities

(2010) Suleyman Yildirim et al.   PLoS One

Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample

(2010) J. G. Caporaso et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Molecular analysis of the bacterial microbiota in duodenal biopsies from dogs with idiopathic inflammatory bowel disease

(2009) Jan S. Suchodolski et al.   VETERINARY MICROBIOLOGY

Statistical Methods for Detecting Differentially Abundant Features in Clinical Metagenomic Samples

(2009) James Robert White et al.   PLoS Computational Biology