4.6 Review Book Chapter

Mapping Structural Dynamics of Proteins with Femtosecond Stimulated Raman Spectroscopy

Journal

ANNUAL REVIEW OF PHYSICAL CHEMISTRY, VOL 71
Volume 71, Issue -, Pages 239-265

Publisher

ANNUAL REVIEWS
DOI: 10.1146/annurev-physchem-071119-040154

Keywords

protein structural dynamics; ultrafast Raman spectroscopy; photochemical reaction coordinates; vibrational coupling; resonance enhancement; excited-state relaxation

Funding

  1. NSF CAREER grant [CHE-1455353]
  2. Oregon Medical Research Foundation New Investigator Grant (2016-2017)
  3. Oregon State University Faculty Research Start-Up Grant (2010-2016)
  4. Research Equipment Reserve Fund (spring 2014)

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The structure-function relationships of biomolecules have captured the interest and imagination of the scientific community and general public since the field of structural biology emerged to enable the molecular understanding of life processes. Proteins that play numerous functional roles in cellular processes have remained in the forefront of research, inspiring new characterization techniques. In this review, we present key theoretical concepts and recent experimental strategies using femtosecond stimulated Raman spectroscopy (FSRS) to map the structural dynamics of proteins, highlighting the flexible chromophores on ultrafast timescales. In particular, wavelength-tunable FSRS exploits dynamic resonance conditions to track transient-species-dependent vibrational motions, enabling rational design to alter functions. Various ways of capturing excited-state chromophore structural snapshots in the time and/or frequency domains are discussed. Continuous development of experimental methodologies, synergistic correlation with theoretical modeling, and the expansion to other nonequilibrium, photoswitchable, and controllable protein systems will greatly advance the chemical, physical, and biological sciences.

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