High throughput techniques to reveal the molecular physiology and evolution of digestion in spiders

Comparison of venoms from wild and long-term captive Bothrops atrox snakes and characterization of Batroxrhagin, the predominant class PIII metalloproteinase from the venom of this species

(2015) L.A. Freitas-de-Sousa et al.   BIOCHIMIE

Digestive peptidase evolution in holometabolous insects led to a divergent group of enzymes in Lepidoptera

(2015) Renata O. Dias et al.   INSECT BIOCHEMISTRY AND MOLECULAR BIOLOGY

Cysteine cathepsins as digestive enzymes in the spider Nephilengys cruentata

(2015) Felipe J. Fuzita et al.   INSECT BIOCHEMISTRY AND MOLECULAR BIOLOGY

Venom-Related Transcripts from Bothrops jararaca Tissues Provide Novel Molecular Insights into the Production and Evolution of Snake Venom

(2015) Inácio L.M. Junqueira-de-Azevedo et al.   MOLECULAR BIOLOGY AND EVOLUTION

Biochemical, Transcriptomic and Proteomic Analyses of Digestion in the Scorpion Tityus serrulatus: Insights into Function and Evolution of Digestion in an Ancient Arthropod

(2015) Felipe J. Fuzita et al.   PLoS One

Phylogenomic Interrogation of Arachnida Reveals Systemic Conflicts in Phylogenetic Signal

(2014) Prashant P. Sharma et al.   MOLECULAR BIOLOGY AND EVOLUTION

IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies

(2014) Lam-Tung Nguyen et al.   MOLECULAR BIOLOGY AND EVOLUTION

Why so many unknown genes? Partitioning orphans from a representative transcriptome of the lone star tick Amblyomma americanum

(2013) Amanda K Gibson et al.   BMC GENOMICS

Ultrafast Approximation for Phylogenetic Bootstrap

(2013) B. Q. Minh et al.   MOLECULAR BIOLOGY AND EVOLUTION

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

A molecular phylogeny of nephilid spiders: Evolutionary history of a model lineage

(2013) Matjaž Kuntner et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Bat Predation by Spiders

(2013) Martin Nyffeler et al.   PLoS One

Archaeal (Per)Chlorate Reduction at High Temperature: An Interplay of Biotic and Abiotic Reactions

(2013) M. G. Liebensteiner et al.   SCIENCE

Oases: robust de novo RNA-seq assembly across the dynamic range of expression levels

(2012) Marcel H. Schulz et al.   BIOINFORMATICS

Inferring duplications, losses, transfers and incomplete lineage sorting with nonbinary species trees

(2012) Maureen Stolzer et al.   BIOINFORMATICS

Dynamics of digestive proteolytic system during blood feeding of the hard tick Ixodes ricinus

(2011) Zdeněk Franta et al.   Parasites & Vectors

Expression profiling, gene silencing and transcriptional networking of metzincin metalloproteases in the cattle tick, Rhipicephalus (Boophilus) microplus

(2011) Annette-Christi Barnard et al.   VETERINARY PARASITOLOGY

Collagenolytic Activities of the Major Secreted Cathepsin L Peptidases Involved in the Virulence of the Helminth Pathogen, Fasciola hepatica

(2011) Mark W. Robinson et al.   PLoS Neglected Tropical Diseases

TreeGraph 2: Combining and visualizing evidence from different phylogenetic analyses

(2010) Ben C Stöver et al.   BMC BIOINFORMATICS

An Alignment Confidence Score Capturing Robustness to Guide Tree Uncertainty

(2010) O. Penn et al.   MOLECULAR BIOLOGY AND EVOLUTION

XTandem Parser: An open-source library to parse and analyse X!Tandem MS/MS search results

(2010) Thilo Muth et al.   PROTEOMICS

Scaffold: A bioinformatic tool for validating MS/MS-based proteomic studies

(2010) Brian C. Searle   PROTEOMICS

FrameDP: sensitive peptide detection on noisy matured sequences

(2009) J. Gouzy et al.   BIOINFORMATICS

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

(2008) D. R. Zerbino et al.   GENOME RESEARCH

High-throughput functional annotation and data mining with the Blast2GO suite

(2008) S. Gotz et al.   NUCLEIC ACIDS RESEARCH