Thermal reactionomes reveal divergent responses to thermal extremes in warm and cool-climate ant species

A multiple-gene phylogeny reveals polyphyly among eastern North American Aphaenogaster species (Hymenoptera: Formicidae)

(2016) Bernice B. DeMarco et al.   ZOOLOGICA SCRIPTA

BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs

(2015) Felipe A. Simão et al.   BIOINFORMATICS

Implementing a Class of Permutation Tests: ThecoinPackage

(2015) Torsten Hothorn et al.   Journal of Statistical Software

Evolutionary Change in Continuous Reaction Norms

(2014) Courtney J. Murren et al.   AMERICAN NATURALIST

Gene expression in closely related species mirrors local adaptation: consequences for responses to a warming world

(2014) Shawn T. O'Neil et al.   MOLECULAR ECOLOGY

Sailfish enables alignment-free isoform quantification from RNA-seq reads using lightweight algorithms

(2014) Rob Patro et al.   NATURE BIOTECHNOLOGY

Thermal-safety margins and the necessity of thermoregulatory behavior across latitude and elevation

(2014) J. M. Sunday et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Predicting future coexistence in a North American ant community

(2014) Sharon Bewick et al.   Ecology and Evolution

Rapid Evolution of Phenotypic Plasticity and Shifting Thresholds of Genetic Assimilation in the Nematode Caenorhabditis remanei

(2014) Kristin L. Sikkink et al.   G3-Genes Genomes Genetics

Trade-Offs, Geography, and Limits to Thermal Adaptation in a Tide Pool Copepod

(2013) Morgan W. Kelly et al.   AMERICAN NATURALIST

Inducing extra copies of the Hsp70 gene in Drosophila melanogaster increases energetic demand

(2013) Luke A Hoekstra et al.   BMC EVOLUTIONARY BIOLOGY

Optimizing de novo assembly of short-read RNA-seq data for phylogenomics

(2013) Ya Yang et al.   BMC GENOMICS

Heat stress and the fitness consequences of climate change for terrestrial ectotherms

(2013) Joel G. Kingsolver et al.   FUNCTIONAL ECOLOGY

Upward ant distribution shift corresponds with minimum, not maximum, temperature tolerance

(2013) Robert J. Warren et al.   GLOBAL CHANGE BIOLOGY

The rewards of restraint in the collective regulation of foraging by harvester ant colonies

(2013) Deborah M. Gordon   NATURE

Social Insects Dominate Eastern US Temperate Hardwood Forest Macroinvertebrate Communities in Warmer Regions

(2013) Joshua R. King et al.   PLoS One

Genomic basis for coral resilience to climate change

(2013) Daniel J. Barshis et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A physiological trait-based approach to predicting the responses of species to experimental climate warming

(2012) Sarah E. Diamond et al.   ECOLOGY

Upper thermal limits in terrestrial ectotherms: how constrained are they?

(2012) Ary A. Hoffmann et al.   FUNCTIONAL ECOLOGY

Abundant Gene-by-Environment Interactions in Gene Expression Reaction Norms to Copper within Saccharomyces cerevisiae

(2012) Andrea Hodgins-Davis et al.   Genome Biology and Evolution

A multivariate test of evolutionary constraints for thermal tolerance in Drosophila melanogaster

(2012) B. R. WILLIAMS et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

A Critical Assessment of Storytelling: Gene Ontology Categories and the Importance of Validating Genomic Scans

(2012) Pavlos Pavlidis et al.   MOLECULAR BIOLOGY AND EVOLUTION

Functional Determinants of Temperature Adaptation in Enzymes of Cold- versus Warm-Adapted Mussels (Genus Mytilus)

(2012) B. L. Lockwood et al.   MOLECULAR BIOLOGY AND EVOLUTION

Challenges and strategies in transcriptome assembly and differential gene expression quantification. A comprehensivein silicoassessment of RNA-seq experiments

(2012) Nagarjun Vijay et al.   MOLECULAR ECOLOGY

RobiNA: a user-friendly, integrated software solution for RNA-Seq-based transcriptomics

(2012) M. Lohse et al.   NUCLEIC ACIDS RESEARCH

Combined transcriptomic and metabolomic approach uncovers molecular mechanisms of cold tolerance in a temperate flesh fly

(2012) Nicholas M. Teets et al.   PHYSIOLOGICAL GENOMICS

Expression of Ixodes scapularis Antifreeze Glycoprotein Enhances Cold Tolerance in Drosophila melanogaster

(2012) Girish Neelakanta et al.   PLoS One

Upper thermal limits of Drosophila are linked to species distributions and strongly constrained phylogenetically

(2012) V. Kellermann et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Gene expression changes governing extreme dehydration tolerance in an Antarctic insect

(2012) N. M. Teets et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Measurement of mRNA abundance using RNA-seq data: RPKM measure is inconsistent among samples

(2012) Günter P. Wagner et al.   THEORY IN BIOSCIENCES

Common garden experiments reveal uncommon responses across temperatures, locations, and species of ants

(2012) Shannon L. Pelini et al.   Ecology and Evolution

Comparative physiology: a “crystal ball” for predicting consequences of global change

(2011) George N. Somero   AMERICAN JOURNAL OF PHYSIOLOGY-REGULATORY INTEGRATIVE AND COMPARATIVE PHYSIOLOGY

Disruption of ant-seed dispersal mutualisms by the invasive Asian needle ant (Pachycondyla chinensis)

(2011) Mariano A. Rodriguez-Cabal et al.   BIOLOGICAL INVASIONS

Genome-wide deficiency screen for the genomic regions responsible for heat resistance in Drosophila melanogaster

(2011) Kazuo H Takahashi et al.   BMC GENETICS

Cold tolerance and cold-induced modulation of gene expression in two Drosophila virilis group species with different distributions

(2011) L. Vesala et al.   INSECT MOLECULAR BIOLOGY

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

Candidate Genes Detected in Transcriptome Studies Are Strongly Dependent on Genetic Background

(2011) Pernille Sarup et al.   PLoS One

Fast Identification and Removal of Sequence Contamination from Genomic and Metagenomic Datasets

(2011) Robert Schmieder et al.   PLoS One

Transcriptomic resilience to global warming in the seagrass Zostera marina, a marine foundation species

(2011) S. U. Franssen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The genomic impact of 100 million years of social evolution in seven ant species

(2011) Jürgen Gadau et al.   TRENDS IN GENETICS

The mixed effects of experimental ant removal on seedling distribution, belowground invertebrates, and soil nutrients

(2011) Tamara J. Zelikova et al.   Ecosphere

Cellular Proteomes Have Broad Distributions of Protein Stability

(2010) Kingshuk Ghosh et al.   BIOPHYSICAL JOURNAL

The Heat Shock Response: Life on the Verge of Death

(2010) Klaus Richter et al.   MOLECULAR CELL

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

The Well‐Temperatured Biologist

(2009) Joel G. Kingsolver   AMERICAN NATURALIST

Genomic reaction norms: using integrative biology to understand molecular mechanisms of phenotypic plasticity

(2009) NADIA AUBIN-HORTH et al.   MOLECULAR ECOLOGY

Uncommon specialization in a mutualism between a temperate herbaceous plant guild and an ant: areAphaenogasterants keystone mutualists?

(2009) J. H. Ness et al.   OIKOS

On Theoretical Models of Gene Expression Evolution with Random Genetic Drift and Natural Selection

(2009) Osamu Ogasawara et al.   PLoS One

Detecting genetic responses to environmental change

(2008) Ary A. Hoffmann et al.   NATURE REVIEWS GENETICS

Impacts of climate warming on terrestrial ectotherms across latitude

(2008) C. A. Deutsch et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA