FRAMA: from RNA-seq data to annotated mRNA assemblies

The Naked Mole Rat Genome Resource: facilitating analyses of cancer and longevity-related adaptations

(2014) M. Keane et al.   BIOINFORMATICS

Expanding frontiers in plant transcriptomics in aid of functional genomics and molecular breeding

(2014) Pinky Agarwal et al.   Biotechnology Journal

Dynamic recruitment of amino acid transporters to the insect/symbiont interface

(2014) Rebecca P. Duncan et al.   MOLECULAR ECOLOGY

Genetic Signatures for Enhanced Olfaction in the African Mole-Rats

(2014) Sofia Stathopoulos et al.   PLoS One

Adaptations to a Subterranean Environment and Longevity Revealed by the Analysis of Mole Rat Genomes

(2014) Xiaodong Fang et al.   Cell Reports

A comparison across non-model animals suggests an optimal sequencing depth for de novo transcriptome assembly

(2013) Warren R Francis et al.   BMC GENOMICS

Assessment of transcript reconstruction methods for RNA-seq

(2013) Tamara Steijger et al.   NATURE METHODS

Systematic evaluation of spliced alignment programs for RNA-seq data

(2013) Pär G Engström et al.   NATURE METHODS

Database resources of the National Center for Biotechnology Information

(2013)   NUCLEIC ACIDS RESEARCH

Transcriptome analysis of human tissues and cell lines reveals one dominant transcript per gene

(2013) Mar Gonzàlez-Porta et al.   GENOME BIOLOGY

Oases: robust de novo RNA-seq assembly across the dynamic range of expression levels

(2012) Marcel H. Schulz et al.   BIOINFORMATICS

Identification of 3′ gene ends using transcriptional and genomic conservation across vertebrates

(2012) Marcos Morgan et al.   BMC GENOMICS

Optimizing de novo common wheat transcriptome assembly using short-read RNA-Seq data

(2012) Jialei Duan et al.   BMC GENOMICS

A beginner's guide to eukaryotic genome annotation

(2012) Mark Yandell et al.   NATURE REVIEWS GENETICS

RNA-Seq Assembly – Are We There Yet?

(2012) Simon Schliesky et al.   Frontiers in Plant Science

Optimizing de novo transcriptome assembly from short-read RNA-Seq data: a comparative study

(2011) Qiong-Yi Zhao et al.   BMC BIOINFORMATICS

Macaque cytochromes P450: nomenclature, transcript, gene, genomic structure, and function

(2011) Yasuhiro Uno et al.   DRUG METABOLISM REVIEWS

Genome sequencing reveals insights into physiology and longevity of the naked mole rat

(2011) Eun Bae Kim et al.   NATURE

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

Next-generation transcriptome assembly

(2011) Jeffrey A. Martin et al.   NATURE REVIEWS GENETICS

The Long Gestation of the Small Naked Mole-Rat (Heterocephalus glaber RÜPPELL, 1842) Studied with Ultrasound Biomicroscopy and 3D-Ultrasonography

(2011) Kathleen Roellig et al.   PLoS One

Gains, Losses and Changes of Function after Gene Duplication: Study of the Metallothionein Family

(2011) Ana Moleirinho et al.   PLoS One

Optimization of de novo transcriptome assembly from next-generation sequencing data

(2010) Y. Surget-Groba et al.   GENOME RESEARCH

Primate-specific regulation of natural killer cells

(2010) Peter Parham et al.   JOURNAL OF MEDICAL PRIMATOLOGY

Comparative Biology of Aging

(2009) S. N. Austad   JOURNALS OF GERONTOLOGY SERIES A-BIOLOGICAL SCIENCES AND MEDICAL SCIENCES

Phylogenetic and Functional Assessment of Orthologs Inference Projects and Methods

(2009) Adrian M. Altenhoff et al.   PLoS Computational Biology

Negligible senescence in the longest living rodent, the naked mole-rat: insights from a successfully aging species

(2008) Rochelle Buffenstein   JOURNAL OF COMPARATIVE PHYSIOLOGY B-BIOCHEMICAL SYSTEMIC AND ENVIRONMENTAL PHYSIOLOGY

Mapping and quantifying mammalian transcriptomes by RNA-Seq

(2008) Ali Mortazavi et al.   NATURE METHODS