Genome-wide recruitment profiling of transcription factor Crz1 in response to high pH stress

Features that define the best ChIP-seq peak calling algorithms

(2016) Reuben Thomas et al.   BRIEFINGS IN BIOINFORMATICS

Conserved and Diverged Functions of the Calcineurin-Activated Prz1 Transcription Factor in Fission Yeast

(2016) K. Chatfield-Reed et al.   GENETICS

Regulation of the Na+/K+-ATPase Ena1 Expression by Calcineurin/Crz1 under High pH Stress: A Quantitative Study

(2016) Silvia Petrezsélyová et al.   PLoS One

Calcineurin-Crz1 Signaling in Lower Eukaryotes

(2014) S. Thewes   EUKARYOTIC CELL

Coregulated Expression of the Na+/Phosphate Pho89 Transporter and Ena1 Na+-ATPase Allows Their Functional Coupling under High-pH Stress

(2014) A. Serra-Cardona et al.   MOLECULAR AND CELLULAR BIOLOGY

Ptc6 Is Required for Proper Rapamycin-Induced Down-Regulation of the Genes Coding for Ribosomal and rRNA Processing Proteins in S. cerevisiae

(2013) Asier González et al.   PLoS One

The role of the Snf1 kinase in the adaptive response ofSaccharomyces cerevisiaeto alkaline pH stress

(2012) Antonio Casamayor et al.   BIOCHEMICAL JOURNAL

Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration

(2012) H. Thorvaldsdottir et al.   BRIEFINGS IN BIOINFORMATICS

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

High Resolution Genome Wide Binding Event Finding and Motif Discovery Reveals Transcription Factor Spatial Binding Constraints

(2012) Yuchun Guo et al.   PLoS Computational Biology

The role of the protein kinase A pathway in the response to alkaline pH stress in yeast

(2011) Carlos Casado et al.   BIOCHEMICAL JOURNAL

Regulation of chromatin by histone modifications

(2011) Andrew J Bannister et al.   CELL RESEARCH

H3 Lysine 4 Is Acetylated at Active Gene Promoters and Is Regulated by H3 Lysine 4 Methylation

(2011) Benoit Guillemette et al.   PLoS Genetics

Integrative Responses to High pH Stress in S. cerevisiae

(2010) Joaquín Ariño   OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY

Combining ChIP-chip and Expression Profiling to Model the MoCRZ1 Mediated Circuit for Ca2+/Calcineurin Signaling in the Rice Blast Fungus

(2010) Soonok Kim et al.   PLoS Pathogens

Bidirectional promoters generate pervasive transcription in yeast

(2009) Zhenyu Xu et al.   NATURE

A barrier nucleosome model for statistical positioning of nucleosomes throughout the yeast genome

(2008) T. N. Mavrich et al.   GENOME RESEARCH

Direct Regulation of Genes Involved in Glucose Utilization by the Calcium/Calcineurin Pathway

(2008) Amparo Ruiz et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

A Library of Yeast Transcription Factor Motifs Reveals a Widespread Function for Rsc3 in Targeting Nucleosome Exclusion at Promoters

(2008) Gwenael Badis et al.   MOLECULAR CELL

Model-based Analysis of ChIP-Seq (MACS)

(2008) Yong Zhang et al.   GENOME BIOLOGY