Transcriptome profiling of the rumen epithelium of beef cattle differing in residual feed intake

HTSeq--a Python framework to work with high-throughput sequencing data

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Copy number variations of the extensively amplified Y-linked genes, HSFY and ZNF280BY, in cattle and their association with male reproductive traits in Holstein bulls

(2014) Xiang-Peng Yue et al.   BMC GENOMICS

Mitochondrial protein acetylation regulates metabolism

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Relationships between residual feed intake and hepatic mitochondrial function in growing beef cattle1

(2014) P. A. Lancaster et al.   JOURNAL OF ANIMAL SCIENCE

Residual feed intake studies in Angus-sired cattle reveal a potential role for hypothalamic gene expression in regulating feed efficiency1,2

(2014) S. D. Perkins et al.   JOURNAL OF ANIMAL SCIENCE

EphB/ephrinB Signaling in Cell Adhesion and Migration

(2014) Inji Park et al.   MOLECULES AND CELLS

Forces in Tissue Morphogenesis and Patterning

(2013) Carl-Philipp Heisenberg et al.   CELL

Candidate genes and single nucleotide polymorphisms associated with variation in residual feed intake in beef cattle1

(2013) B. K. Karisa et al.   JOURNAL OF ANIMAL SCIENCE

Data, information, knowledge and principle: back to metabolism in KEGG

(2013) Minoru Kanehisa et al.   NUCLEIC ACIDS RESEARCH

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

(2013) Daehwan Kim et al.   GENOME BIOLOGY

Detection of human herpesvirus 8 by quantitative polymerase chain reaction: development and standardisation of methods

(2012) David J Speicher et al.   BMC INFECTIOUS DISEASES

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Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

PANTHER in 2013: modeling the evolution of gene function, and other gene attributes, in the context of phylogenetic trees

(2012) Huaiyu Mi et al.   NUCLEIC ACIDS RESEARCH

Identification of optimal housekeeping genes for examination of gene expression in bovine corpus luteum

(2012) Robert Rekawiecki et al.   Reproductive Biology

Bovine rumen epithelium undergoes rapid structural adaptations during grain-induced subacute ruminal acidosis

(2011) Michael A. Steele et al.   AMERICAN JOURNAL OF PHYSIOLOGY-REGULATORY INTEGRATIVE AND COMPARATIVE PHYSIOLOGY

Global gene expression profiling reveals genes expressed differentially in cattle with high and low residual feed intake

(2011) Y. Chen et al.   ANIMAL GENETICS

Dynamics of adherens junctions in epithelial establishment, maintenance, and remodeling

(2011) Buzz Baum et al.   JOURNAL OF CELL BIOLOGY

Characterization of bovine ruminal epithelial bacterial communities using 16S rRNA sequencing, PCR-DGGE, and qRT-PCR analysis

(2011) Meiju Li et al.   VETERINARY MICROBIOLOGY

Feed efficiency differences and reranking in beef steers fed grower and finisher diets1

(2010) O. N. Durunna et al.   JOURNAL OF ANIMAL SCIENCE

Cellular Metabolic Stress: Considering How Cells Respond to Nutrient Excess

(2010) Kathryn E. Wellen et al.   MOLECULAR CELL

Bicarbonate-dependent and bicarbonate-independent mechanisms contribute to nondiffusive uptake of acetate in the ruminal epithelium of sheep

(2009) Jörg R. Aschenbach et al.   AMERICAN JOURNAL OF PHYSIOLOGY-GASTROINTESTINAL AND LIVER PHYSIOLOGY

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Phenotypic and genetic parameters for different measures of feed efficiency in different breeds of Irish performance-tested beef bulls

(2009) J. J. Crowley et al.   JOURNAL OF ANIMAL SCIENCE

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

(2009) Da Wei Huang et al.   Nature Protocols

Mapping identifiers for the integration of genomic datasets with the R/Bioconductor package biomaRt

(2009) Steffen Durinck et al.   Nature Protocols

WGCNA: an R package for weighted correlation network analysis

(2008) Peter Langfelder et al.   BMC BIOINFORMATICS

Linkage of microbial ecology to phenotype: correlation of rumen microbial ecology to cattle's feed efficiency

(2008) Le Luo Guan et al.   FEMS MICROBIOLOGY LETTERS

Physiological basis for residual feed intake1

(2008) R. M. Herd et al.   JOURNAL OF ANIMAL SCIENCE

Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists

(2008) Da Wei Huang et al.   NUCLEIC ACIDS RESEARCH