Genomic and metagenomic analysis of microbes in a soil environment affected by the 2011 Great East Japan Earthquake tsunami

Comparative genome analysis reveals the molecular basis of nicotine degradation and survival capacities of Arthrobacter

(2015) Yuxiang Yao et al.   Scientific Reports

MetaMetaDB: A Database and Analytic System for Investigating Microbial Habitability

(2014) Ching-chia Yang et al.   PLoS One

Microbial Ecology of Thailand Tsunami and Non-Tsunami Affected Terrestrials

(2014) Naraporn Somboonna et al.   PLoS One

Kraken: ultrafast metagenomic sequence classification using exact alignments

(2014) Derrick E Wood et al.   GENOME BIOLOGY

Bacterial siderophores efficiently provide iron to iron-starved tomato plants in hydroponics culture

(2013) W. Radzki et al.   ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY

MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0

(2013) Koichiro Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

eggNOG v4.0: nested orthology inference across 3686 organisms

(2013) Sean Powell et al.   NUCLEIC ACIDS RESEARCH

Ribosomal Database Project: data and tools for high throughput rRNA analysis

(2013) James R. Cole et al.   NUCLEIC ACIDS RESEARCH

RefSeq microbial genomes database: new representation and annotation strategy

(2013) Tatiana Tatusova et al.   NUCLEIC ACIDS RESEARCH

PhyloPhlAn is a new method for improved phylogenetic and taxonomic placement of microbes

(2013) Nicola Segata et al.   Nature Communications

Gene and translation initiation site prediction in metagenomic sequences

(2012) Doug Hyatt et al.   BIOINFORMATICS

SortMeRNA: fast and accurate filtering of ribosomal RNAs in metatranscriptomic data

(2012) Evguenia Kopylova et al.   BIOINFORMATICS

Floristic variation of beach vegetation caused by the 2011 Tohoku-oki tsunami in northern Tohoku, Japan

(2012) Daisuke Hayasaka et al.   ECOLOGICAL ENGINEERING

Bacterial Hazards of Sludge Brought Ashore by the Tsunami after the Great East Japan Earthquake of 2011

(2012) Koji Wada et al.   JOURNAL OF OCCUPATIONAL HEALTH

Update on activities at the Universal Protein Resource (UniProt) in 2013

(2012)   NUCLEIC ACIDS RESEARCH

GenBank

(2012) Dennis A. Benson et al.   NUCLEIC ACIDS RESEARCH

Assessing the magnitude of the 869 Jogan tsunami using sedimentary deposits: Prediction and consequence of the 2011 Tohoku-oki tsunami

(2012) Daisuke Sugawara et al.   SEDIMENTARY GEOLOGY

The Genome of Erysipelothrix rhusiopathiae, the Causative Agent of Swine Erysipelas, Reveals New Insights into the Evolution of Firmicutes and the Organism's Intracellular Adaptations

(2011) Y. Ogawa et al.   JOURNAL OF BACTERIOLOGY

The 2011 Magnitude 9.0 Tohoku-Oki Earthquake: Mosaicking the Megathrust from Seconds to Centuries

(2011) M. Simons et al.   SCIENCE

Soil salinity in Aceh after the December 2004 Indian Ocean tsunami

(2010) M.K. McLeod et al.   AGRICULTURAL WATER MANAGEMENT

Artificial and natural duplicates in pyrosequencing reads of metagenomic data

(2010) Beifang Niu et al.   BMC BIOINFORMATICS

Prodigal: prokaryotic gene recognition and translation initiation site identification

(2010) Doug Hyatt et al.   BMC BIOINFORMATICS

Chemistry and biology of siderophores

(2010) Robert C. Hider et al.   NATURAL PRODUCT REPORTS

BLAST+: architecture and applications

(2009) Christiam Camacho et al.   BMC BIOINFORMATICS

Erysipeloid: a review

(2009) S. Veraldi et al.   CLINICAL AND EXPERIMENTAL DERMATOLOGY

Pyrococcus CH1, an obligate piezophilic hyperthermophile: extending the upper pressure-temperature limits for life

(2009) Xiang Zeng et al.   ISME Journal

Heavy metal resistance in Arthrobacter ramosus strain G2 isolated from mercuric salt-contaminated soil

(2009) Amit Bafana et al.   JOURNAL OF HAZARDOUS MATERIALS

Variability of soil–water quality due to Tsunami-2004 in the coastal belt of Nagapattinam district, Tamilnadu

(2007) H. Chandrasekharan et al.   JOURNAL OF ENVIRONMENTAL MANAGEMENT