De novo assembly of Sockeye salmon kidney transcriptomes reveal a limited early response to piscine reovirus with or without infectious hematopoietic necrosis virus superinfection

Extracting functional trends from whole genome duplication events using comparative genomics

(2016) Russell A. Hermansen et al.   BIOLOGICAL PROCEDURES ONLINE

Functional Genomic Analysis of the Impact of Camelina (Camelina sativa) Meal on Atlantic Salmon (Salmo salar) Distal Intestine Gene Expression and Physiology

(2016) Tyler D. Brown et al.   MARINE BIOTECHNOLOGY

Differences in gene expression in Atlantic salmon parr and smolt after challenge with Piscine orthoreovirus (PRV)

(2016) Lill-Heidi Johansen et al.   MOLECULAR IMMUNOLOGY

Piscine Orthoreovirus from Western North America Is Transmissible to Atlantic Salmon and Sockeye Salmon but Fails to Cause Heart and Skeletal Muscle Inflammation

(2016) Kyle A. Garver et al.   PLoS One

Long noncoding RNAs (lncRNAs) dynamics evidence immunomodulation during ISAV-Infected Atlantic salmon (Salmo salar)

(2016) Sebastian Boltaña et al.   Scientific Reports

Uncovering the novel characteristics of Asian honey bee, Apis cerana, by whole genome sequencing

(2015) Doori Park et al.   BMC GENOMICS

Transcriptome analyses of Atlantic salmon (Salmo salar L.) erythrocytes infected with piscine orthoreovirus (PRV)

(2015) Maria Krudtaa Dahle et al.   FISH & SHELLFISH IMMUNOLOGY

Comparison of transcriptomic responses to pancreas disease (PD) and heart and skeletal muscle inflammation (HSMI) in heart of Atlantic salmon (Salmo salar L)

(2015) Lill-Heidi Johansen et al.   FISH & SHELLFISH IMMUNOLOGY

Piscine reovirus, but not Jaundice Syndrome, was transmissible to Chinook Salmon,Oncorhynchus tshawytscha(Walbaum), Sockeye Salmon,Oncorhynchus nerka(Walbaum), and Atlantic Salmon,Salmo salarL.

(2015) K A Garver et al.   JOURNAL OF FISH DISEASES

Association between Respiratory Syncytial Virus Activity and Pneumococcal Disease in Infants: A Time Series Analysis of US Hospitalization Data

(2015) Daniel M. Weinberger et al.   PLOS MEDICINE

Diminished Reovirus Capsid Stability Alters Disease Pathogenesis and Littermate Transmission

(2015) Joshua D. Doyle et al.   PLoS Pathogens

Piscine Reovirus: Genomic and Molecular Phylogenetic Analysis from Farmed and Wild Salmonids Collected on the Canada/US Pacific Coast

(2015) Ahmed Siah et al.   PLoS One

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Transcriptome sequencing of Atlantic salmon (Salmo salar L.) notochord prior to development of the vertebrae provides clues to regulation of positional fate, chordoblast lineage and mineralisation

(2014) Shou Wang et al.   BMC GENOMICS

Piscine reovirus in wild and farmed salmonids in British Columbia, Canada: 1974-2013

(2014) G D Marty et al.   JOURNAL OF FISH DISEASES

A consensus approach to vertebrate de novo transcriptome assembly from RNA-seq data: assembly of the duck (Anas platyrhynchos) transcriptome

(2014) Joanna Moreton et al.   Frontiers in Genetics

Universal reverse-transcriptase real-time PCR for infectious hematopoietic necrosis virus (IHNV)

(2013) MK Purcell et al.   DISEASES OF AQUATIC ORGANISMS

Count-based differential expression analysis of RNA sequencing data using R and Bioconductor

(2013) Simon Anders et al.   Nature Protocols

De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis

(2013) Brian J Haas et al.   Nature Protocols

Sequence Analysis of the Genome of Piscine Orthoreovirus (PRV) Associated with Heart and Skeletal Muscle Inflammation (HSMI) in Atlantic Salmon (Salmo salar)

(2013) Turhan Markussen et al.   PLoS One

Estimation of Parameters Influencing Waterborne Transmission of Infectious Hematopoietic Necrosis Virus (IHNV) in Atlantic Salmon (Salmo salar)

(2013) Kyle A Garver et al.   PLoS One

Identifying the Interaction Between Influenza and Pneumococcal Pneumonia Using Incidence Data

(2013) S. Shrestha et al.   Science Translational Medicine

Kinetics of Coinfection with Influenza A Virus and Streptococcus pneumoniae

(2013) Amber M. Smith et al.   PLoS Pathogens

Efficient assembly and annotation of the transcriptome of catfish by RNA-Seq analysis of a doubled haploid homozygote

(2012) Shikai Liu et al.   BMC GENOMICS

Quantification of piscine reovirus (PRV) at different stages of Atlantic salmon Salmo salar production

(2012) M Løvoll et al.   DISEASES OF AQUATIC ORGANISMS

Bleach gel: A simple agarose gel for analyzing RNA quality

(2012) Patrick S. Aranda et al.   ELECTROPHORESIS

Piscine reovirus (PRV) in wild Atlantic salmon,Salmo salarL., and sea-trout,Salmo truttaL., in Norway

(2012) Å. H. Garseth et al.   JOURNAL OF FISH DISEASES

Atlantic Salmon Reovirus Infection Causes a CD8 T Cell Myocarditis in Atlantic Salmon (Salmo salar L.)

(2012) Aase B. Mikalsen et al.   PLoS One

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

(2011) Bo Li et al.   BMC BIOINFORMATICS

YY1 Tethers Xist RNA to the Inactive X Nucleation Center

(2011) Yesu Jeon et al.   CELL

A Single-Amino-Acid Polymorphism in Reovirus Protein  2 Determines Repression of Interferon Signaling and Modulates Myocarditis

(2011) S. C. Irvin et al.   JOURNAL OF VIROLOGY

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

Molecular Correlates of Social Dominance: A Novel Role for Ependymin in Aggression

(2011) Lynne U. Sneddon et al.   PLoS One

The Nuclear-Retained Noncoding RNA MALAT1 Regulates Alternative Splicing by Modulating SR Splicing Factor Phosphorylation

(2010) Vidisha Tripathi et al.   MOLECULAR CELL

Heart and Skeletal Muscle Inflammation of Farmed Salmon Is Associated with Infection with a Novel Reovirus

(2010) Gustavo Palacios et al.   PLoS One

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

qpcR: an R package for sigmoidal model selection in quantitative real-time polymerase chain reaction analysis

(2008) C. Ritz et al.   BIOINFORMATICS

Protection of rainbow trout from infectious hematopoietic necrosis (IHN) by injection of infectious pancreatic necrosis virus (IPNV) or Poly(I:C)

(2008) HJ Kim et al.   DISEASES OF AQUATIC ORGANISMS

The Air Noncoding RNA Epigenetically Silences Transcription by Targeting G9a to Chromatin

(2008) T. Nagano et al.   SCIENCE