Uncovering the pathways underlying whole body regeneration in a chordate model, Botrylloides leachi using de novo transcriptome analysis

Regeneration across Metazoan Phylogeny: Lessons from Model Organisms

(2015) Qiao Li et al.   Journal of Genetics and Genomics

The BioMart community portal: an innovative alternative to large, centralized data repositories

(2015) Damian Smedley et al.   NUCLEIC ACIDS RESEARCH

Wnt and Notch signaling pathway involved in wound healing by targeting c-Myc and Hes1 separately

(2015) Yan Shi et al.   Stem Cell Research & Therapy

Initiating a regenerative response; cellular and molecular features of wound healing in the cnidarian Nematostella vectensis

(2014) Timothy Q DuBuc et al.   BMC BIOLOGY

Targeting stem cell signaling pathways for drug discovery: advances in the Notch and Wnt pathways

(2014) Songzhu Michael An et al.   Science China-Life Sciences

Wnt/β-Catenin Signaling Defines Organizing Centers that Orchestrate Growth and Differentiation of the Regenerating Zebrafish Caudal Fin

(2014) Daniel Wehner et al.   Cell Reports

Count-based differential expression analysis of RNA sequencing data using R and Bioconductor

(2013) Simon Anders et al.   Nature Protocols

De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis

(2013) Brian J Haas et al.   Nature Protocols

Complement-triggered pathways orchestrate regenerative responses throughout phylogenesis

(2013) Dimitrios C. Mastellos et al.   SEMINARS IN IMMUNOLOGY

The genome sequence of the colonial chordate, Botryllus schlosseri

(2013) Ayelet Voskoboynik et al.   eLife

Regeneration and reprogramming

(2012) Dunja Knapp et al.   CURRENT OPINION IN GENETICS & DEVELOPMENT

Hes repressors are essential regulators of hematopoietic stem cell development downstream of Notch signaling

(2012) Jordi Guiu et al.   JOURNAL OF EXPERIMENTAL MEDICINE

Differential expression analysis of multifactor RNA-Seq experiments with respect to biological variation

(2012) Davis J. McCarthy et al.   NUCLEIC ACIDS RESEARCH

Wnt5a Potentiates TGF-  Signaling to Promote Colonic Crypt Regeneration After Tissue Injury

(2012) H. Miyoshi et al.   SCIENCE

Wnt Signaling and Injury Repair

(2012) J. L. Whyte et al.   Cold Spring Harbor Perspectives in Biology

No chromosomal clustering of housekeeping genes in the marine chordate Ciona intestinalis

(2011) Eiichi Shoguchi et al.   Marine Genomics

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

KEGG for integration and interpretation of large-scale molecular data sets

(2011) M. Kanehisa et al.   NUCLEIC ACIDS RESEARCH

UniProt Knowledgebase: a hub of integrated protein data

(2011) M. Magrane et al.   Database-The Journal of Biological Databases and Curation

Determinative roles of FGF and Wnt signals in iris-derived lens regeneration in newt eye

(2010) Toshinori Hayashi et al.   DEVELOPMENT GROWTH & DIFFERENTIATION

Piwi positive cells that line the vasculature epithelium, underlie whole body regeneration in a basal chordate

(2010) Yuval Rinkevich et al.   DEVELOPMENTAL BIOLOGY

Wnt signal transduction pathways

(2010) Yuko Komiya et al.   Organogenesis

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Angiogenesis: A Team Effort Coordinated by Notch

(2009) L.-K. Phng et al.   DEVELOPMENTAL CELL

TGF-β Superfamily Signaling in Embryonic Development and Homeostasis

(2009) Mary Y. Wu et al.   DEVELOPMENTAL CELL

Whole body regeneration in a colonial ascidian,Botrylloides violaceus

(2009) Federico D. Brown et al.   JOURNAL OF EXPERIMENTAL ZOOLOGY PART B-MOLECULAR AND DEVELOPMENTAL EVOLUTION

Wnt/ -Catenin and noncanonical Wnt signaling interact in tissue evagination in the simple eumetazoan Hydra

(2009) I. Philipp et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Cell signaling and transcription factor genes expressed during whole body regeneration in a colonial chordate

(2008) Yuval Rinkevich et al.   BMC DEVELOPMENTAL BIOLOGY

TGF-β signaling is required for multiple processes during Xenopus tail regeneration

(2008) Diana M. Ho et al.   DEVELOPMENTAL BIOLOGY

Analyzing real-time PCR data by the comparative CT method

(2008) Thomas D Schmittgen et al.   Nature Protocols

Assessing the gene space in draft genomes

(2008) Genis Parra et al.   NUCLEIC ACIDS RESEARCH

The Groucho/TLE/Grg family of transcriptional co-repressors

(2008) Barbara H Jennings et al.   GENOME BIOLOGY