Multicopy gene family evolution on primate Y chromosomes

Sex chromosome-to-autosome transposition events counter Y-chromosome gene loss in mammals

(2015) Jennifer F Hughes et al.   GENOME BIOLOGY

Copy number variations of the extensively amplified Y-linked genes, HSFY and ZNF280BY, in cattle and their association with male reproductive traits in Holstein bulls

(2014) Xiang-Peng Yue et al.   BMC GENOMICS

Sequencing the Mouse Y Chromosome Reveals Convergent Gene Acquisition and Amplification on Both Sex Chromosomes

(2014) Y.Q. Shirleen Soh et al.   CELL

Reduced Representation Genome Sequencing Suggests Low Diversity on the Sex Chromosomes of Tonkean Macaque Monkeys

(2014) Ben J. Evans et al.   MOLECULAR BIOLOGY AND EVOLUTION

Mammalian Y chromosomes retain widely expressed dosage-sensitive regulators

(2014) Daniel W. Bellott et al.   NATURE

Origins and functional evolution of Y chromosomes across mammals

(2014) Diego Cortez et al.   NATURE

Evolution and diversity of copy number variation in the great ape lineage

(2013) P. H. Sudmant et al.   GENOME RESEARCH

Intrachromosomal homologous recombination between inverted amplicons on opposing Y-chromosome arms

(2013) Julian Lange et al.   GENOMICS

Primate genome architecture influences structural variation mechanisms and functional consequences

(2013) O. Gokcumen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Recombination Dynamics of a Human Y-Chromosomal Palindrome: Rapid GC-Biased Gene Conversion, Multi-kilobase Conversion Tracts, and Rare Inversions

(2013) Pille Hallast et al.   PLoS Genetics

Absolute copy number differences of Y chromosomal genes between crossbred (Bos taurus × Bos indicus) and Indicine bulls

(2013) Ayan Mukherjee et al.   Journal of Animal Science and Biotechnology

Sequencing of rhesus macaque Y chromosome clarifies origins and evolution of theDAZ(Deleted in AZoospermia) genes

(2012) Jennifer F. Hughes et al.   BIOESSAYS

Chromothripsis and Human Disease: Piecing Together the Shattering Process

(2012) Christopher A. Maher et al.   CELL

Evolution of Genomic Structures on Mammalian Sex Chromosomes

(2012) Yukako Katsura et al.   CURRENT GENOMICS

The Effect of Nonindependent Mate Pairing on the Effective Population Size

(2012) B. J. Evans et al.   GENETICS

Gene Survival and Death on the Human Y Chromosome

(2012) Melissa A. Wilson Sayres et al.   MOLECULAR BIOLOGY AND EVOLUTION

Phylogenetic Patterns of GC-Biased Gene Conversion in Placental Mammals and the Evolutionary Dynamics of Recombination Landscapes

(2012) Nicolas Lartillot   MOLECULAR BIOLOGY AND EVOLUTION

Insights into hominid evolution from the gorilla genome sequence

(2012) Aylwyn Scally et al.   NATURE

Strict evolutionary conservation followed rapid gene loss on human and rhesus Y chromosomes

(2012) Jennifer F. Hughes et al.   NATURE

Determining the evolutionary history of gene families

(2011) Ryan M. Ames et al.   BIOINFORMATICS

BadiRate: estimating family turnover rates by likelihood-based methods

(2011) P. Librado et al.   BIOINFORMATICS

ZNF280BY and ZNF280AY: autosome derived Y-chromosome gene families in Bovidae

(2011) Yang Yang et al.   BMC GENOMICS

Chromosome Catastrophes Involve Replication Mechanisms Generating Complex Genomic Rearrangements

(2011) Pengfei Liu et al.   CELL

Gorilla genome structural variation reveals evolutionary parallelisms with chimpanzee

(2011) M. Ventura et al.   GENOME RESEARCH

Association of Sly with sex-linked gene amplification during mouse evolution: a side effect of genomic conflict in spermatids?

(2011) Peter J.I. Ellis et al.   HUMAN MOLECULAR GENETICS

Comparative and demographic analysis of orang-utan genomes

(2011) Devin P. Locke et al.   NATURE

Y-Chromosome Variation in Hominids: Intraspecific Variation Is Limited to the Polygamous Chimpanzee

(2011) Gabriele Greve et al.   PLoS One

Impacts of the Cretaceous Terrestrial Revolution and KPg Extinction on Mammal Diversification

(2011) R. W. Meredith et al.   SCIENCE

Are all sex chromosomes created equal?

(2011) Doris Bachtrog et al.   TRENDS IN GENETICS

A Molecular Phylogeny of Living Primates

(2011) Polina Perelman et al.   PLoS Genetics

Genome sequence and global sequence variation map with 5.5 million SNPs in Chinese rhesus macaque

(2011) Xiaodong Fang et al.   GENOME BIOLOGY

An Exceptional Gene: Evolution of the TSPY Gene Family in Humans and Other Great Apes

(2011) Yali Xue et al.   Genes

Expression breadth and expression abundance behave differently in correlations with evolutionary rates

(2010) Seung Park et al.   BMC EVOLUTIONARY BIOLOGY

The human RPS4 paralogue on Yq11.223 encodes a structurally conserved ribosomal protein and is preferentially expressed during spermatogenesis

(2010) Alexandra M Lopes et al.   BMC MOLECULAR BIOLOGY

A W-linked palindrome and gene conversion in New World sparrows and blackbirds

(2010) Jamie K. Davis et al.   CHROMOSOME RESEARCH

Gene Duplication, Gene Conversion and the Evolution of the Y Chromosome

(2010) Tim Connallon et al.   GENETICS

Sex-Linked Inheritance in Macaque Monkeys: Implications for Effective Population Size and Dispersal to Sulawesi

(2010) B. J. Evans et al.   GENETICS

Can Intra-Y Gene Conversion Oppose the Degeneration of the Human Y Chromosome?: A Simulation Study

(2010) G. A. B. Marais et al.   Genome Biology and Evolution

Contrasting GC-content dynamics across 33 mammalian genomes: Relationship with life-history traits and chromosome sizes

(2010) J. Romiguier et al.   GENOME RESEARCH

Genetic Dissection of the AZF Regions of the Human Y Chromosome: Thriller or Filler for Male (In)fertility?

(2010) Paulo Navarro-Costa et al.   JOURNAL OF BIOMEDICINE AND BIOTECHNOLOGY

Accurate and objective copy number profiling using real-time quantitative PCR

(2010) Barbara D’haene et al.   METHODS

Extensive Gene Conversion Drives the Concerted Evolution of Paralogous Copies of the SRY Gene in European Rabbits

(2010) A. Geraldes et al.   MOLECULAR BIOLOGY AND EVOLUTION

Chimpanzee and human Y chromosomes are remarkably divergent in structure and gene content

(2010) Jennifer F. Hughes et al.   NATURE

Y Chromosomal Variation Tracks the Evolution of Mating Systems in Chimpanzee and Bonobo

(2010) Felix Schaller et al.   PLoS One

Analysis of Genetic Inheritance in a Family Quartet by Whole-Genome Sequencing

(2010) J. C. Roach et al.   SCIENCE

TSPY and Male Fertility

(2010) Csilla Krausz et al.   Genes

Isodicentric Y Chromosomes and Sex Disorders as Byproducts of Homologous Recombination that Maintains Palindromes

(2009) Julian Lange et al.   CELL

Non-B DNA structure-induced genetic instability and evolution

(2009) Junhua Zhao et al.   CELLULAR AND MOLECULAR LIFE SCIENCES

The MIQE Guidelines: Minimum Information for Publication of Quantitative Real-Time PCR Experiments

(2009) S. A. Bustin et al.   CLINICAL CHEMISTRY

Copy number variation on the human Y chromosome

(2009) M.A. Jobling   CYTOGENETIC AND GENOME RESEARCH

Y chromosome TSPY copy numbers and semen quality

(2009) Bita Nickkholgh et al.   FERTILITY AND STERILITY

TSPY1Copy Number Variation Influences Spermatogenesis and Shows Differences among Y Lineages

(2009) Claudia Giachini et al.   JOURNAL OF CLINICAL ENDOCRINOLOGY & METABOLISM

Evolution of X-Degenerate Y Chromosome Genes in Greater Apes: Conservation of Gene Content in Human and Gorilla, But Not Chimpanzee

(2009) Hiroki Goto et al.   JOURNAL OF MOLECULAR EVOLUTION

Effective population size and patterns of molecular evolution and variation

(2009) Brian Charlesworth   NATURE REVIEWS GENETICS

Mechanisms of change in gene copy number

(2009) P. J. Hastings et al.   NATURE REVIEWS GENETICS

Evolution and Survival on Eutherian Sex Chromosomes

(2009) Melissa A. Wilson et al.   PLoS Genetics

RPS4Y gene family evolution in primates

(2008) Olga Andrés et al.   BMC EVOLUTIONARY BIOLOGY

Evolution of the DAZ gene and the AZFc region on primate Y chromosomes

(2008) Yueh-Hsiang Yu et al.   BMC EVOLUTIONARY BIOLOGY

The Evolutionary Rate of Duplicated Genes Under Concerted Evolution

(2008) S. Mano et al.   GENETICS

Evolutionary dynamics of segmental duplications from human Y-chromosomal euchromatin/heterochromatin transition regions

(2008) S. Kirsch et al.   GENOME RESEARCH

Polymorphic Y Chromosomes Harbor Cryptic Variation with Manifold Functional Consequences

(2008) B. Lemos et al.   SCIENCE