Intracellular Ca2+ and K+ concentration in Brassica oleracea leaf induces differential expression of transporter and stress-related genes

Digital gene expression analysis of gene expression differences within Brassica diploids and allopolyploids

(2015) Jinjin Jiang et al.   BMC PLANT BIOLOGY

Identification of tapetum-specific genes by comparing global gene expression of four different male sterile lines in Brassica oleracea

(2015) Yuan Ma et al.   PLANT MOLECULAR BIOLOGY

Response of NBS encoding resistance genes linked to both heat and fungal stress in Brassica oleracea

(2015) Young-Wook Kim et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Comparative analysis of 11 Brassicales mitochondrial genomes and the mitochondrial transcriptome of Brassica oleracea

(2014) Felix Grewe et al.   MITOCHONDRION

High-Throughput Sequencing and De Novo Assembly of Brassica oleracea var. Capitata L. for Transcriptome Analysis

(2014) Hyun A. Kim et al.   PLoS One

Transcriptome and methylome profiling reveals relics of genome dominance in the mesopolyploid Brassica oleracea

(2014) Isobel AP Parkin et al.   GENOME BIOLOGY

High-throughput sequencing identification of novel and conserved miRNAs in the Brassica oleracea leaves

(2013) Anna Lukasik et al.   BMC GENOMICS

Oases: robust de novo RNA-seq assembly across the dynamic range of expression levels

(2012) Marcel H. Schulz et al.   BIOINFORMATICS

Regulation of the major vacuolar Ca2+ transporter genes, by intercellular Ca2+ concentration and abiotic stresses, in tip-burn resistant Brassica oleracea

(2012) Jeongyeo Lee et al.   MOLECULAR BIOLOGY REPORTS

Transcript Profile of the Response of Two Soybean Genotypes to Potassium Deficiency

(2012) Cheng Wang et al.   PLoS One

Transcriptome analysis of ectopic chloroplast development in green curd cauliflower (Brassica oleracea L. var. botrytis)

(2011) Xiangjun Zhou et al.   BMC PLANT BIOLOGY

Next-generation transcriptome assembly

(2011) Jeffrey A. Martin et al.   NATURE REVIEWS GENETICS

SolexaQA: At-a-glance quality assessment of Illumina second-generation sequencing data

(2010) Murray P Cox et al.   BMC BIOINFORMATICS

Uncovering the Complexity of Transcriptomes with RNA-Seq

(2010) Valerio Costa et al.   JOURNAL OF BIOMEDICINE AND BIOTECHNOLOGY

Calcium Signals: The Lead Currency of Plant Information Processing

(2010) J. Kudla et al.   PLANT CELL

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

(2008) D. R. Zerbino et al.   GENOME RESEARCH

Applications of next-generation sequencing technologies in functional genomics

(2008) Olena Morozova et al.   GENOMICS

The effect of potassium nutrition on pest and disease resistance in plants

(2008) Anna Amtmann et al.   PHYSIOLOGIA PLANTARUM