Comparative transcriptome analysis of Gastrodia elata (Orchidaceae) in response to fungus symbiosis to identify gastrodin biosynthesis-related genes
Published 2016 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Comparative transcriptome analysis of Gastrodia elata (Orchidaceae) in response to fungus symbiosis to identify gastrodin biosynthesis-related genes
Authors
Keywords
Gastrodin, Deep sequencing, Gene regulation, Monooxygenase, Glycosyltransferase
Journal
BMC GENOMICS
Volume 17, Issue 1, Pages -
Publisher
Springer Nature
Online
2016-03-09
DOI
10.1186/s12864-016-2508-6
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Highly diversified fungi are associated with the achlorophyllous orchid Gastrodia flavilabella
- (2015) Tsunglin Liu et al. BMC GENOMICS
- limma powers differential expression analyses for RNA-sequencing and microarray studies
- (2015) Matthew E. Ritchie et al. NUCLEIC ACIDS RESEARCH
- Trimmomatic: a flexible trimmer for Illumina sequence data
- (2014) Anthony M. Bolger et al. BIOINFORMATICS
- De novo transcriptome analysis of Hevea brasiliensis tissues by RNA-seq and screening for molecular markers
- (2014) Leonardo Salgado et al. BMC GENOMICS
- Fast and sensitive protein alignment using DIAMOND
- (2014) Benjamin Buchfink et al. NATURE METHODS
- De Novo Assembly and Characterization of the Transcriptome of the Parasitic Weed Dodder Identifies Genes Associated with Plant Parasitism
- (2014) A. Ranjan et al. PLANT PHYSIOLOGY
- Translation of the human erythropoietin transcript is regulated by an upstream open reading frame in response to hypoxia
- (2014) C. Barbosa et al. RNA
- De novo transcriptome sequencing of radish (Raphanus sativus L.) and analysis of major genes involved in glucosinolate metabolism
- (2013) Yan Wang et al. BMC GENOMICS
- The 5′-untranslated region regulates ATF5 mRNA stability via nonsense-mediated mRNA decay in response to environmental stress
- (2013) Masaya Hatano et al. FEBS Journal
- De Novo Transcriptome Assembly (NGS) of Curcuma longa L. Rhizome Reveals Novel Transcripts Related to Anticancer and Antimalarial Terpenoids
- (2013) Ramasamy S. Annadurai et al. PLoS One
- Transcriptomic analysis of Chinese bayberry (Myrica rubra) fruit development and ripening using RNA-Seq
- (2012) Chao Feng et al. BMC GENOMICS
- A comprehensive evaluation of normalization methods for Illumina high-throughput RNA sequencing data analysis
- (2012) M.-A. Dillies et al. BRIEFINGS IN BIOINFORMATICS
- A Comprehensive Transcriptome Assembly of Pigeonpea (Cajanus cajan L.) using Sanger and Second-Generation Sequencing Platforms
- (2012) Himabindu Kudapa et al. Molecular Plant
- In vitro symbiotic germination of myco-heterotrophic Gastrodia elata by Mycena species
- (2012) Eung-Jun Park et al. Plant Biotechnology Reports
- In vitro propagation of myco-heterotrophic Gastrodia elata
- (2012) Eung-Jun Park et al. Horticulture Environment and Biotechnology
- A comprehensive protein-centric ID mapping service for molecular data integration
- (2011) H. Huang et al. BIOINFORMATICS
- RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome
- (2011) Bo Li et al. BMC BIOINFORMATICS
- De novo assembled expressed gene catalog of a fast-growing Eucalyptus tree produced by Illumina mRNA-Seq
- (2011) Eshchar Mizrachi et al. BMC GENOMICS
- De novo assembly and characterization of root transcriptome using Illumina paired-end sequencing and development of cSSR markers in sweetpotato (Ipomoea batatas)
- (2011) Zhangying Wang et al. BMC GENOMICS
- De novo assembly of Euphorbia fischeriana root transcriptome identifies prostratin pathway related genes
- (2011) Roberto A Barrero et al. BMC GENOMICS
- Deep sequencing of the Camellia sinensis transcriptome revealed candidate genes for major metabolic pathways of tea-specific compounds
- (2011) Cheng-Ying Shi et al. BMC GENOMICS
- De novo transcriptome sequencing in Salvia miltiorrhiza to identify genes involved in the biosynthesis of active ingredients
- (2011) Hua Wenping et al. GENOMICS
- Full-length transcriptome assembly from RNA-Seq data without a reference genome
- (2011) Manfred G Grabherr et al. NATURE BIOTECHNOLOGY
- De Novo Assembly of Expressed Transcripts and Global Analysis of the Phalaenopsis aphrodite Transcriptome
- (2011) Chun-lin Su et al. PLANT AND CELL PHYSIOLOGY
- Autoregulation of the nonsense-mediated mRNA decay pathway in human cells
- (2011) H. Yepiskoposyan et al. RNA
- Enzymic Synthesis of Gastrodin through Microbial Transformation and Purification of Gastrodin Biosynthesis Enzyme
- (2010) Hongli Zhu et al. BIOLOGICAL & PHARMACEUTICAL BULLETIN
- De novo sequencing and analysis of the American ginseng root transcriptome using a GS FLX Titanium platform to discover putative genes involved in ginsenoside biosynthesis
- (2010) Chao Sun et al. BMC GENOMICS
- Studies of Mycorrhizal Fungi of Chinese Orchids and Their Role in Orchid Conservation in China—A Review
- (2010) Hongxia Liu et al. BOTANICAL REVIEW
- Linking NE1545 gene expression with cell volume changes in Nitrosomonas europaea cells exposed to aromatic hydrocarbons
- (2010) Tyler S. Radniecki et al. CHEMOSPHERE
- Stress-sensitive Regulation of IFRD1 mRNA Decay Is Mediated by an Upstream Open Reading Frame
- (2010) Chenyang Zhao et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- Translational Regulation of Gene Expression during Conditions of Cell Stress
- (2010) Keith A. Spriggs et al. MOLECULAR CELL
- Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation
- (2010) Cole Trapnell et al. NATURE BIOTECHNOLOGY
- A scaling normalization method for differential expression analysis of RNA-seq data
- (2010) Mark D Robinson et al. GENOME BIOLOGY
- Global characterization of Artemisia annua glandular trichome transcriptome using 454 pyrosequencing
- (2009) Wei Wang et al. BMC GENOMICS
- Deep sampling of the Palomero maize transcriptome by a high throughput strategy of pyrosequencing
- (2009) Julio C Vega-Arreguín et al. BMC GENOMICS
- Comparative 454 pyrosequencing of transcripts from two olive genotypes during fruit development
- (2009) Fiammetta Alagna et al. BMC GENOMICS
- Comparison of the transcriptomes of American chestnut (Castanea dentata) and Chinese chestnut (Castanea mollissima) in response to the chestnut blight infection
- (2009) Abdelali Barakat et al. BMC PLANT BIOLOGY
- Anaerobic Catabolism of Aromatic Compounds: a Genetic and Genomic View
- (2009) M. Carmona et al. MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS
- Sequencing technologies — the next generation
- (2009) Michael L. Metzker NATURE REVIEWS GENETICS
- Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
- (2009) Ben Langmead et al. GENOME BIOLOGY
- Production of gastrodin through biotransformation of p-2-hydroxybenzyl alcohol by cultured cells of Armillaria luteo-virens Sacc
- (2008) Hai-Feng Zhang et al. ENZYME AND MICROBIAL TECHNOLOGY
- Full-Malaria/Parasites and Full-Arthropods: databases of full-length cDNAs of parasites and arthropods, update 2009
- (2008) H. Wakaguri et al. NUCLEIC ACIDS RESEARCH
- Glycosyltransferases: Structures, Functions, and Mechanisms
- (2007) L.L. Lairson et al. Annual Review of Biochemistry
Publish scientific posters with Peeref
Peeref publishes scientific posters from all research disciplines. Our Diamond Open Access policy means free access to content and no publication fees for authors.
Learn MoreFind the ideal target journal for your manuscript
Explore over 38,000 international journals covering a vast array of academic fields.
Search