RNA sequencing-based analysis of the spleen transcriptome following infectious bronchitis virus infection of chickens selected for different mannose-binding lectin serum concentrations

TAM Receptor Signaling in Immune Homeostasis

(2015) Carla V. Rothlin et al.   Annual Review of Immunology

limma powers differential expression analyses for RNA-sequencing and microarray studies

(2015) Matthew E. Ritchie et al.   NUCLEIC ACIDS RESEARCH

The consequence of low mannose-binding lectin plasma concentration in relation to susceptibility to Salmonella Infantis in chickens

(2015) Sofie L. Ulrich-Lynge et al.   VETERINARY IMMUNOLOGY AND IMMUNOPATHOLOGY

Progress and Challenges toward the Development of Vaccines against Avian Infectious Bronchitis

(2015) Faruku Bande et al.   Journal of Immunology Research

HTSeq--a Python framework to work with high-throughput sequencing data

(2014) S. Anders et al.   BIOINFORMATICS

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Cutting Edge: CXCR4 Is Critical for CD8+ Memory T Cell Homeostatic Self-Renewal but Not Rechallenge Self-Renewal

(2014) J. Chaix et al.   JOURNAL OF IMMUNOLOGY

SARS-Coronavirus Open Reading Frame-9b Suppresses Innate Immunity by Targeting Mitochondria and the MAVS/TRAF3/TRAF6 Signalosome

(2014) Chong-Shan Shi et al.   JOURNAL OF IMMUNOLOGY

Characterization of Cellular and Humoral Immune Responses After IBV Infection in Chicken Lines Differing in MBL Serum Concentration

(2014) Rikke Munkholm Kjærup et al.   VIRAL IMMUNOLOGY

Induction of innate immune response following infectious bronchitis corona virus infection in the respiratory tract of chickens

(2014) Amber Marie Kameka et al.   VIROLOGY

Regulation of T cell proliferation by JMJD6 and PDGF-BB during chronic hepatitis B infection

(2014) Cai-Feng Chen et al.   Scientific Reports

Transcriptome analysis of chicken kidney tissues following coronavirus avian infectious bronchitis virus infection

(2013) Feng Cong et al.   BMC GENOMICS

The TGF-β-Smad3 pathway inhibits CD28-dependent cell growth and proliferation of CD4 T cells

(2013) J-S Delisle et al.   GENES AND IMMUNITY

Adjuvant effects of mannose-binding lectin ligands on the immune response to infectious bronchitis vaccine in chickens with high or low serum mannose-binding lectin concentrations

(2013) Rikke M. Kjærup et al.   IMMUNOBIOLOGY

Chicken mannose-binding lectin (MBL) gene variants with influence on MBL serum concentrations

(2013) Rikke M. Kjærup et al.   IMMUNOGENETICS

Count-based differential expression analysis of RNA sequencing data using R and Bioconductor

(2013) Simon Anders et al.   Nature Protocols

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

(2013) Daehwan Kim et al.   GENOME BIOLOGY

RSeQC: quality control of RNA-seq experiments

(2012) Liguo Wang et al.   BIOINFORMATICS

Molecular evolution and emergence of avian gammacoronaviruses

(2012) Mark W. Jackwood et al.   INFECTION GENETICS AND EVOLUTION

Differential expression analysis of multifactor RNA-Seq experiments with respect to biological variation

(2012) Davis J. McCarthy et al.   NUCLEIC ACIDS RESEARCH

Infectious bronchitis virus nucleoprotein specific CTL response is generated prior to serum IgG

(2012) Guangliang Liu et al.   VETERINARY IMMUNOLOGY AND IMMUNOPATHOLOGY

Rapid NK-cell activation in chicken after infection with infectious bronchitis virus M41

(2012) L. Vervelde et al.   VETERINARY IMMUNOLOGY AND IMMUNOPATHOLOGY

Correlated response to selection of testosterone levels and immunocompetence in lines selected for avian personality

(2011) Kees van Oers et al.   ANIMAL BEHAVIOUR

Mannan-binding lectin regulates dendritic cell maturation and cytokine production induced by lipopolysaccharide

(2011) Mingyong Wang et al.   BMC IMMUNOLOGY

A functional C-terminal TRAF3-binding site in MAVS participates in positive and negative regulation of the IFN antiviral response

(2011) Suzanne Paz et al.   CELL RESEARCH

Crosstalk between innate and adaptive immune responses to infectious bronchitis virus after vaccination and challenge of chickens varying in serum mannose-binding lectin concentrations

(2011) Helle R. Juul-Madsen et al.   VACCINE

The SARS-Coronavirus-Host Interactome: Identification of Cyclophilins as Target for Pan-Coronavirus Inhibitors

(2011) Susanne Pfefferle et al.   PLoS Pathogens

Cytoscape 2.8: new features for data integration and network visualization

(2010) M. E. Smoot et al.   BIOINFORMATICS

Comparative analysis of the sialic acid binding activity and the tropism for the respiratory epithelium of four different strains of avian infectious bronchitis virus

(2009) S. Abd El Rahman et al.   AVIAN PATHOLOGY

ClueGO: a Cytoscape plug-in to decipher functionally grouped gene ontology and pathway annotation networks

(2009) Gabriela Bindea et al.   BIOINFORMATICS

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Mannan-binding lectin (MBL) in two chicken breeds and the correlation with experimental Pasteurella multocida infection

(2008) T.W. Schou et al.   COMPARATIVE IMMUNOLOGY MICROBIOLOGY AND INFECTIOUS DISEASES

Molecular mechanisms of primary and secondary mucosal immunity using avian infectious bronchitis virus as a model system

(2007) Xueshui Guo et al.   VETERINARY IMMUNOLOGY AND IMMUNOPATHOLOGY