Contrasting origin of B chromosomes in two cervids (Siberian roe deer and grey brocket deer) unravelled by chromosome-specific DNA sequencing

Platinum coat color in red fox (Vulpes vulpes) is caused by a mutation in an autosomal copy ofKIT

(2015) J. L. Johnson et al.   ANIMAL GENETICS

Focal Chromosomal Copy Number Aberrations Identify CMTM8 and GPR177 as New Candidate Driver Genes in Osteosarcoma

(2015) Joeri Both et al.   PLoS One

Origin and Evolution of B Chromosomes in the Cichlid Fish Astatotilapia latifasciata Based on Integrated Genomic Analyses

(2014) Guilherme T. Valente et al.   MOLECULAR BIOLOGY AND EVOLUTION

Unexpected population genetic structure of European roe deer in Poland: an invasion of the mtDNA genome from Siberian roe deer

(2014) Maciej Matosiuk et al.   MOLECULAR ECOLOGY

Demystifying the RAD fad

(2014) Jonathan B. Puritz et al.   MOLECULAR ECOLOGY

Whole-genome sequencing of 234 bulls facilitates mapping of monogenic and complex traits in cattle

(2014) Hans D Daetwyler et al.   NATURE GENETICS

A Quantitative Comparison of Single-Cell Whole Genome Amplification Methods

(2014) Charles F. A. de Bourcy et al.   PLoS One

Weak Population Structure in European Roe Deer (Capreolus capreolus) and Evidence of Introgressive Hybridization with Siberian Roe Deer (C. pygargus) in Northeastern Poland

(2014) Juanita Olano-Marin et al.   PLoS One

Genes on B chromosomes of vertebrates

(2014) Alexey I Makunin et al.   Molecular Cytogenetics

RepeatExplorer: a Galaxy-based web server for genome-wide characterization of eukaryotic repetitive elements from next-generation sequence reads

(2013) P. Novak et al.   BIOINFORMATICS

Transcription of a protein-coding gene on B chromosomes of the Siberian roe deer (Capreolus pygargus)

(2013) Vladimir A Trifonov et al.   BMC BIOLOGY

Cytogenetic description of the Amazonian brown brocket Mazama nemorivaga (Artiodactyla, Cervidae)

(2013) VanessaVeltrini Abril et al.   Comparative Cytogenetics

Chinese hamster genome sequenced from sorted chromosomes

(2013) Karina Brinkrolf et al.   NATURE BIOTECHNOLOGY

The UCSC Genome Browser database: 2014 update

(2013) Donna Karolchik et al.   NUCLEIC ACIDS RESEARCH

SOX9 Duplication Linked to Intersex in Deer

(2013) Regina Kropatsch et al.   PLoS One

CCND2 rearrangements are the most frequent genetic events in cyclin D1- mantle cell lymphoma

(2012) I. Salaverria et al.   BLOOD

Improving ancient DNA read mapping against modern reference genomes

(2012) Mikkel Schubert et al.   BMC GENOMICS

Serial translocation by means of circular intermediates underlies colour sidedness in cattle

(2012) Keith Durkin et al.   NATURE

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Selfish supernumerary chromosome reveals its origin as a mosaic of host genome and organellar sequences

(2012) M. M. Martis et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Whole-genome resequencing shows numerous genes with nonsynonymous SNPs in the Japanese native cattle Kuchinoshima-Ushi

(2011) Ryouka Kawahara-Miki et al.   BMC GENOMICS

Anchoring the dog to its relatives reveals new evolutionary breakpoints across 11 species of the Canidae and provides new clues for the role of B chromosomes

(2011) Shannon E. Duke Becker et al.   CHROMOSOME RESEARCH

The genome diversity and karyotype evolution of mammals

(2011) Alexander S Graphodatsky et al.   Molecular Cytogenetics

BEDTools: a flexible suite of utilities for comparing genomic features

(2010) Aaron R. Quinlan et al.   BIOINFORMATICS

Graph-based clustering and characterization of repetitive sequences in next-generation sequencing data

(2010) Petr Novák et al.   BMC BIOINFORMATICS

Reconstruction of the Putative Cervidae Ancestral Karyotype by Chromosome Painting of Siberian Roe Deer (Capreolus pygargus) with Dromedary Probes

(2010) P.V. Dementyeva et al.   CYTOGENETIC AND GENOME RESEARCH

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

Nuclear phosphoinositide 3-kinase   controls double-strand break DNA repair

(2010) A. Kumar et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Supernumerary chromosomes, segmental duplications, and evolution

(2010) V. A. Trifonov et al.   RUSSIAN JOURNAL OF GENETICS

High-throughput sequencing of microdissected chromosomal regions

(2009) Anja Weise et al.   EUROPEAN JOURNAL OF HUMAN GENETICS

Breakpoint analysis of balanced chromosome rearrangements by next-generation paired-end sequencing

(2009) Wei Chen et al.   EUROPEAN JOURNAL OF HUMAN GENETICS

Breakpoint regions and homologous synteny blocks in chromosomes have different evolutionary histories

(2009) D. M. Larkin et al.   GENOME RESEARCH

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

(2009) Da Wei Huang et al.   Nature Protocols

Deep short-read sequencing of chromosome 17 from the mouse strains A/J and CAST/Ei identifies significant germline variation and candidate genes that regulate liver triglyceride levels

(2009) Ian Sudbery et al.   GENOME BIOLOGY

Chromosome polymorphism in the Brazilian dwarf brocket deer, Mazama nana (Mammalia, Cervidae)

(2008) Vanessa Veltrini Abril et al.   GENETICS AND MOLECULAR BIOLOGY

Mapping translocation breakpoints by next-generation sequencing

(2008) W. Chen et al.   GENOME RESEARCH

The surprising evolutionary history of South American deer

(2008) José Maurício Barbanti Duarte et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Accurate whole human genome sequencing using reversible terminator chemistry

(2008) David R. Bentley et al.   NATURE

Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists

(2008) Da Wei Huang et al.   NUCLEIC ACIDS RESEARCH

DNA amplification is a ubiquitous mechanism of oncogene activation in lung and other cancers

(2008) W W Lockwood et al.   ONCOGENE

Small supernumerary marker chromosomes (sSMC) in humans; are there B chromosomes hidden among them

(2008) Thomas Liehr et al.   Molecular Cytogenetics