Genome-wide SNP discovery and population structure analysis in pepper (Capsicum annuum) using genotyping by sequencing

Germplasm dynamics: the role of ecotypic diversity in shaping the patterns of genetic variation in Lolium perenne

(2016) T. Blackmore et al.   Scientific Reports

Identification of an SNP variation of elite tomato (Solanum lycopersicum L.) lines using genome resequencing analysis

(2016) Yu Jin Jung et al.   Horticulture Environment and Biotechnology

Tracking crop varieties using genotyping-by-sequencing markers: a case study using cassava (Manihot esculenta Crantz)

(2015) Ismail Y. Rabbi et al.   BMC GENETICS

A high density GBS map of bread wheat and its application for dissecting complex disease resistance traits

(2015) Huihui Li et al.   BMC GENOMICS

Genome-wide SNP discovery and identification of QTL associated with agronomic traits in oil palm using genotyping-by-sequencing (GBS)

(2015) Wirulda Pootakham et al.   GENOMICS

Marker-assisted backcross breeding for development of pepper varieties (Capsicum annuum) containing capsinoids

(2015) Hyeon-Seok Jeong et al.   MOLECULAR BREEDING

Development and GBS-genotyping of introgression lines (ILs) using two wild species of rice, O. meridionalis and O. rufipogon, in a common recurrent parent, O. sativa cv. Curinga

(2015) Juan D. Arbelaez et al.   MOLECULAR BREEDING

Landscape genetics, adaptive diversity and population structure inPhaseolus vulgaris

(2015) Monica Rodriguez et al.   NEW PHYTOLOGIST

A multi-trait characterization of the ‘Friariello’ landrace: a Mediterranean resource for sweet pepper breeding

(2015) Mario Parisi et al.   Plant Genetic Resources-Characterization and Utilization

SNP markers applied to the characterization of Spanish tomato (Solanum lycopersicum L.) landraces

(2015) C. Cortés-Olmos et al.   SCIENTIA HORTICULTURAE

Employing genome-wide SNP discovery and genotyping strategy to extrapolate the natural allelic diversity and domestication patterns in chickpea

(2015) Alice Kujur et al.   Frontiers in Plant Science

A multi-trait characterization of the ‘Friariello’ landrace: a Mediterranean resource for sweet pepper breeding

(2015) Mario Parisi et al.   Plant Genetic Resources-Characterization and Utilization

Single nucleotide polymorphisms generated by genotyping by sequencing to characterize genome-wide diversity, linkage disequilibrium, and selective sweeps in cultivated watermelon

(2014) Padma Nimmakayala et al.   BMC GENOMICS

Linkage disequilibrium and population-structure analysis among Capsicum annuum L. cultivars for use in association mapping

(2014) Padma Nimmakayala et al.   MOLECULAR GENETICS AND GENOMICS

Genome sequence of the hot pepper provides insights into the evolution of pungency in Capsicum species

(2014) Seungill Kim et al.   NATURE GENETICS

The Sol Genomics Network (SGN)—from genotype to phenotype to breeding

(2014) Noe Fernandez-Pozo et al.   NUCLEIC ACIDS RESEARCH

TASSEL-GBS: A High Capacity Genotyping by Sequencing Analysis Pipeline

(2014) Jeffrey C. Glaubitz et al.   PLoS One

The USDA Barley Core Collection: Genetic Diversity, Population Structure, and Potential for Genome-Wide Association Studies

(2014) María Muñoz-Amatriaín et al.   PLoS One

New Insights into Capsicum spp Relatedness and the Diversification Process of Capsicum annuum in Spain

(2014) Susana González-Pérez et al.   PLoS One

Whole-genome sequencing of cultivated and wild peppers provides insights into Capsicum domestication and specialization

(2014) C. Qin et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Next generation sequencing technologies for next generation plant breeding

(2014) Soham Ray et al.   Frontiers in Plant Science

SNP genotyping reveals genetic diversity between cultivated landraces and contemporary varieties of tomato

(2013) Giandomenico Corrado et al.   BMC GENOMICS

Genotyping a large collection of pepper (Capsicum spp.) with SSR loci brings new evidence for the wild origin of cultivated C. annuum and the structuring of genetic diversity by human selection of cultivar types

(2013) Maryse Nicolaï et al.   GENETIC RESOURCES AND CROP EVOLUTION

Genetic diversity analysis of yellow mustard (Sinapis alba L.) germplasm based on genotyping by sequencing

(2013) Yong-Bi Fu et al.   GENETIC RESOURCES AND CROP EVOLUTION

An Improved Genotyping by Sequencing (GBS) Approach Offering Increased Versatility and Efficiency of SNP Discovery and Genotyping

(2013) Humira Sonah et al.   PLoS One

A Next-Generation Sequencing Method for Genotyping-by-Sequencing of Highly Heterozygous Autotetraploid Potato

(2013) Jan G. A. M. L. Uitdewilligen et al.   PLoS One

The Population Structure and Diversity of Eggplant from Asia and the Mediterranean Basin

(2013) Fabio Cericola et al.   PLoS One

Genetic diversity in Capsicum germplasm based on microsatellite and random amplified microsatellite polymorphism markers

(2013) Ved Prakash Rai et al.   PHYSIOLOGY AND MOLECULAR BIOLOGY OF PLANTS

De novo assembly of the pepper transcriptome (Capsicum annuum): a benchmark for in silico discovery of SNPs, SSRs and candidate genes

(2012) Hamid Ashrafi et al.   BMC GENOMICS

Identification of SNP and SSR markers in eggplant using RAD tag sequencing

(2011) Lorenzo Barchi et al.   BMC GENOMICS

Evolution of the large genome in Capsicum annuum occurred through accumulation of single-type long terminal repeat retrotransposons and their derivatives

(2011) Minkyu Park et al.   PLANT JOURNAL

A Robust, Simple Genotyping-by-Sequencing (GBS) Approach for High Diversity Species

(2011) Robert J. Elshire et al.   PLoS One

STRUCTURE HARVESTER: a website and program for visualizing STRUCTURE output and implementing the Evanno method

(2011) Dent A. Earl et al.   Conservation Genetics Resources

BEDTools: a flexible suite of utilities for comparing genomic features

(2010) Aaron R. Quinlan et al.   BIOINFORMATICS

High-throughput genotyping by whole-genome resequencing

(2009) X. Huang et al.   GENOME RESEARCH

Using Allele Sharing Distance for Detecting Human Population Stratification

(2009) Xiaoyi Gao et al.   HUMAN HEREDITY

AWclust: point-and-click software for non-parametric population structure analysis

(2008) Xiaoyi Gao et al.   BMC BIOINFORMATICS