A maximum-likelihood approach for building cell-type trees by lifting

Cell-type Phylogenetics and the Origin of Endometrial Stromal Cells

(2015) Koryu Kin et al.   Cell Reports

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

Study of cell differentiation by phylogenetic analysis using histone modification data

(2014) Nishanth Nair et al.   BMC BIOINFORMATICS

ENCODE Data in the UCSC Genome Browser: year 5 update

(2012) Kate R. Rosenbloom et al.   NUCLEIC ACIDS RESEARCH

Hotspots of aberrant epigenomic reprogramming in human induced pluripotent stem cells

(2011) Ryan Lister et al.   NATURE

A User's Guide to the Encyclopedia of DNA Elements (ENCODE)

(2011)   PLOS BIOLOGY

phangorn: phylogenetic analysis in R

(2010) Klaus Peter Schliep   BIOINFORMATICS

Forcing cells to change lineages

(2009) Thomas Graf et al.   NATURE

The evolution of cell types in animals: emerging principles from molecular studies

(2008) Detlev Arendt   NATURE REVIEWS GENETICS