The founder-cell transcriptome in the Arabidopsis apetala1 cauliflower inflorescence meristem

QuickNGS elevates Next-Generation Sequencing data analysis to a new level of automation

(2015) Prerana Wagle et al.   BMC GENOMICS

AnArabidopsisTranscriptional Regulatory Map Reveals Distinct Functional and Evolutionary Features of Novel Transcription Factors

(2015) Jinpu Jin et al.   MOLECULAR BIOLOGY AND EVOLUTION

The ASYMMETRIC LEAVES Complex Employs Multiple Modes of Regulation to Affect Adaxial-Abaxial Patterning and Leaf Complexity

(2015) Aman Y. Husbands et al.   PLANT CELL

AINTEGUMENTA and AINTEGUMENTA-LIKE6/PLETHORA3 Induce LEAFY Expression in Response to Auxin to Promote the Onset of Flower Formation in Arabidopsis

(2015) Nobutoshi Yamaguchi et al.   PLANT PHYSIOLOGY

Cytokinin–auxin crosstalk in cell type specification

(2015) John William Chandler et al.   TRENDS IN PLANT SCIENCE

Patterns and Polarity in Floral Meristem and Floral Organ Initiation

(2014) J. W. Chandler   CRITICAL REVIEWS IN PLANT SCIENCES

A high-resolution gene expression map of the Arabidopsis shoot meristem stem cell niche

(2014) R. K. Yadav et al.   DEVELOPMENT

Arabidopsis floral phytomer development: auxin response relative to biphasic modes of organ initiation

(2014) J. W. Chandler et al.   JOURNAL OF EXPERIMENTAL BOTANY

Arabidopsis VIM Proteins Regulate Epigenetic Silencing by Modulating DNA Methylation and Histone Modification in Cooperation with MET1

(2014) Jeongsik Kim et al.   Molecular Plant

Auxin Depletion from the Leaf Axil Conditions Competence for Axillary Meristem Formation in Arabidopsis and Tomato

(2014) Q. Wang et al.   PLANT CELL

Molecular genetic framework for protophloem formation

(2014) A. Rodriguez-Villalon et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Auxin depletion from leaf primordia contributes to organ patterning

(2014) Jiyan Qi et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Dynamics of chromatin accessibility and gene regulation by MADS-domain transcription factors in flower development

(2014) Alice Pajoro et al.   GENOME BIOLOGY

How boundaries control plant development

(2013) Petra Žádníková et al.   CURRENT OPINION IN PLANT BIOLOGY

A Molecular Framework for Auxin-Mediated Initiation of Flower Primordia

(2013) Nobutoshi Yamaguchi et al.   DEVELOPMENTAL CELL

Cytokinin signalling inhibitory fields provide robustness to phyllotaxis

(2013) Fabrice Besnard et al.   NATURE

The AP2/EREBP Gene PUCHI Co-Acts with LBD16/ASL18 and LBD18/ASL20 Downstream of ARF7 and ARF19 to Regulate Lateral Root Development in Arabidopsis

(2013) Na Young Kang et al.   PLANT AND CELL PHYSIOLOGY

A variant of LEAFY reveals its capacity to stimulate meristem development by inducingRAX1

(2013) Hicham Chahtane et al.   PLANT JOURNAL

RNA-Seq of Arabidopsis Pollen Uncovers Novel Transcription and Alternative Splicing

(2013) A. E. Loraine et al.   PLANT PHYSIOLOGY

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

(2013) Daehwan Kim et al.   GENOME BIOLOGY

Floral meristem initiation and emergence in plants

(2012) J. W. Chandler   CELLULAR AND MOLECULAR LIFE SCIENCES

Arabidopsis JAGGED LATERAL ORGANS Acts with ASYMMETRIC LEAVES2 to Coordinate KNOX and PIN Expression in Shoot and Root Meristems

(2012) M. I. Rast et al.   PLANT CELL

LATE MERISTEM IDENTITY2 acts together with LEAFY to activate APETALA1

(2011) J. J. Pastore et al.   DEVELOPMENT

Lateral root initiation: one step at a time

(2011) Ive De Smet   NEW PHYTOLOGIST

DORNRÖSCHEN-LIKE expression marks Arabidopsis floral organ founder cells and precedes auxin response maxima

(2011) John William Chandler et al.   PLANT MOLECULAR BIOLOGY

Expression of Arabidopsis SHORT INTERNODES/STYLISH Family Genes in Auxin Biosynthesis Zones of Aerial Organs Is Dependent on a GCC Box-Like Regulatory Element

(2011) D. M. Eklund et al.   PLANT PHYSIOLOGY

Founder cell specification

(2011) John W. Chandler   TRENDS IN PLANT SCIENCE

Spatiotemporal regulation of cell-cycle genes by SHORTROOT links patterning and growth

(2010) R. Sozzani et al.   NATURE

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

(2010) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

miR390,Arabidopsis TAS3tasiRNAs, and TheirAUXIN RESPONSE FACTORTargets Define an Autoregulatory Network Quantitatively Regulating Lateral Root Growth

(2010) Elena Marin et al.   PLANT CELL

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

miR156-Regulated SPL Transcription Factors Define an Endogenous Flowering Pathway in Arabidopsis thaliana

(2009) Jia-Wei Wang et al.   CELL

A Role for Arabidopsis PUCHI in Floral Meristem Identity and Bract Suppression

(2009) Md. R. Karim et al.   PLANT CELL

Gene expression map of the Arabidopsis shoot apical meristem stem cell niche

(2009) R. K. Yadav et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A spatial dissection of the Arabidopsis floral transcriptome by MPSS

(2008) Jason A Peiffer et al.   BMC PLANT BIOLOGY

The meristem-to-organ boundary: more than an extremity of anything

(2008) Madlen I. Rast et al.   CURRENT OPINION IN GENETICS & DEVELOPMENT

Signals Derived from YABBY Gene Activities in Organ Primordia Regulate Growth and Partitioning of Arabidopsis Shoot Apical Meristems

(2008) A. Goldshmidt et al.   PLANT CELL

Arabidopsis DEMETER-LIKE proteins DML2 and DML3 are required for appropriate distribution of DNA methylation marks

(2008) Ana Pilar Ortega-Galisteo et al.   PLANT MOLECULAR BIOLOGY

The Transcriptional Landscape of the Yeast Genome Defined by RNA Sequencing

(2008) U. Nagalakshmi et al.   SCIENCE