Blood miRNomes and transcriptomes reveal novel longevity mechanisms in the long-lived bat, Myotis myotis

Distribution of miRNA genes in the pig genome

(2015) Paulina Paczynska et al.   BMC GENETICS

Role of gelsolin in cell proliferation and invasion of human hepatocellular carcinoma cells

(2015) Biao Deng et al.   GENE

Transcriptome Profiling of the Virus-Induced Innate Immune Response in Pteropus vampyrus and Its Attenuation by Nipah Virus Interferon Antagonist Functions

(2015) Nicole B. Glennon et al.   JOURNAL OF VIROLOGY

A nonlethal sampling method to obtain, generate and assemble whole blood transcriptomes from small, wild mammals

(2015) Zixia Huang et al.   Molecular Ecology Resources

Identification and Characterization of Circular RNAs As a New Class of Putative Biomarkers in Human Blood

(2015) Sebastian Memczak et al.   PLoS One

Characterisation of novel microRNAs in the Black flying fox (Pteropus alecto) by deep sequencing

(2014) Christopher Cowled et al.   BMC GENOMICS

Targeted deletion of RasGRP1 impairs skin tumorigenesis

(2014) Amrish Sharma et al.   CARCINOGENESIS

miR-101 Promotes Breast Cancer Cell Apoptosis by Targeting Janus Kinase 2

(2014) Lu Wang et al.   CELLULAR PHYSIOLOGY AND BIOCHEMISTRY

Large Numbers of Novel miRNAs Originate from DNA Transposons and Are Coincident with a Large Species Radiation in Bats

(2014) Roy N. Platt et al.   MOLECULAR BIOLOGY AND EVOLUTION

Sailfish enables alignment-free isoform quantification from RNA-seq reads using lightweight algorithms

(2014) Rob Patro et al.   NATURE BIOTECHNOLOGY

Accuracy of MicroRNA Discovery Pipelines in Non-Model Organisms Using Closely Related Species Genomes

(2014) Kayvan Etebari et al.   PLoS One

Comparison of Brain Transcriptome of the Greater Horseshoe Bats (Rhinolophus ferrumequinum) in Active and Torpid Episodes

(2014) Ming Lei et al.   PLoS One

Expansion of ruminant-specific microRNAs shapes target gene expression divergence between ruminant and non-ruminant species

(2013) Hua Bao et al.   BMC GENOMICS

Comparative inner ear transcriptome analysis between the Rickett’s big-footed bats (Myotis ricketti) and the greater short-nosed fruit bats (Cynopterus sphinx)

(2013) Dong Dong et al.   BMC GENOMICS

Genome-wide signatures of convergent evolution in echolocating mammals

(2013) Joe Parker et al.   NATURE

miRBase: annotating high confidence microRNAs using deep sequencing data

(2013) Ana Kozomara et al.   NUCLEIC ACIDS RESEARCH

Genome analysis reveals insights into physiology and longevity of the Brandt’s bat Myotis brandtii

(2013) Inge Seim et al.   Nature Communications

A blood based 12-miRNA signature of Alzheimer disease patients

(2013) Petra Leidinger et al.   GENOME BIOLOGY

A Dual Role for UVRAG in Maintaining Chromosomal Stability Independent of Autophagy

(2012) Zhen Zhao et al.   DEVELOPMENTAL CELL

MicroRNAs and their roles in aging

(2012) T. Smith-Vikos et al.   JOURNAL OF CELL SCIENCE

NGS QC Toolkit: A Toolkit for Quality Control of Next Generation Sequencing Data

(2012) Ravi K. Patel et al.   PLoS One

Comparative Analysis of Bat Genomes Provides Insight into the Evolution of Flight and Immunity

(2012) G. Zhang et al.   SCIENCE

Oxidative damage, ageing, and life-history evolution: where now?

(2012) Colin Selman et al.   TRENDS IN ECOLOGY & EVOLUTION

Increased expression of miR-34a and miR-93 in rat liver during aging, and their impact on the expression of Mgst1 and Sirt1

(2011) Na Li et al.   MECHANISMS OF AGEING AND DEVELOPMENT

Genome sequencing reveals insights into physiology and longevity of the naked mole rat

(2011) Eun Bae Kim et al.   NATURE

Evolution of microRNA diversity and regulation in animals

(2011) Eugene Berezikov   NATURE REVIEWS GENETICS

Ensembl BioMarts: a hub for data retrieval across taxonomic space

(2011) R. J. Kinsella et al.   Database-The Journal of Biological Databases and Curation

BEDTools: a flexible suite of utilities for comparing genomic features

(2010) Aaron R. Quinlan et al.   BIOINFORMATICS

SHIP1 Inhibition Increases Immunoregulatory Capacity and Triggers Apoptosis of Hematopoietic Cancer Cells

(2010) R. Brooks et al.   JOURNAL OF IMMUNOLOGY

Genome-wide analysis of miRNA expression reveals a potential role for miR-144 in brain aging and spinocerebellar ataxia pathogenesis

(2010) Stephan Persengiev et al.   NEUROBIOLOGY OF AGING

Adaptive evolution of energy metabolism genes and the origin of flight in bats

(2010) Y.-Y. Shen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A scaling normalization method for differential expression analysis of RNA-seq data

(2010) Mark D Robinson et al.   GENOME BIOLOGY

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

Bats and birds: Exceptional longevity despite high metabolic rates

(2009) Jason Munshi-South et al.   AGEING RESEARCH REVIEWS

miR-155 gene: A typical multifunctional microRNA

(2009) Isabella Faraoni et al.   BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR BASIS OF DISEASE

Circos: An information aesthetic for comparative genomics

(2009) M. Krzywinski et al.   GENOME RESEARCH

Methusaleh's Zoo: How Nature provides us with Clues for Extending Human Health Span

(2009) S.N. Austad   JOURNAL OF COMPARATIVE PATHOLOGY

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

Murine microRNAs implicated in liver functions and aging process

(2008) Olivier C. Maes et al.   MECHANISMS OF AGEING AND DEVELOPMENT

Discovering microRNAs from deep sequencing data using miRDeep

(2008) Marc R Friedländer et al.   NATURE BIOTECHNOLOGY

Mapping and quantifying mammalian transcriptomes by RNA-Seq

(2008) Ali Mortazavi et al.   NATURE METHODS