Evaluation of genetic variation among Brazilian soybean cultivars through genome resequencing

Resequencing 302 wild and cultivated accessions identifies genes related to domestication and improvement in soybean

(2015) Zhengkui Zhou et al.   NATURE BIOTECHNOLOGY

fastSTRUCTURE: Variational Inference of Population Structure in Large SNP Data Sets

(2014) Anil Raj et al.   GENETICS

Distinct Copy Number, Coding Sequence, and Locus Methylation Patterns Underlie Rhg1-Mediated Soybean Resistance to Soybean Cyst Nematode

(2014) D. E. Cook et al.   PLANT PHYSIOLOGY

Major Soybean Maturity Gene Haplotypes Revealed by SNPViz Analysis of 72 Sequenced Soybean Genomes

(2014) Tiffany Langewisch et al.   PLoS One

Allelic Combinations of Soybean Maturity Loci E1, E2, E3 and E4 Result in Diversity of Maturity and Adaptation to Different Latitudes

(2014) Bingjun Jiang et al.   PLoS One

Molecular footprints of domestication and improvement in soybean revealed by whole genome re-sequencing

(2013) Ying-hui Li et al.   BMC GENOMICS

Genetic variation in four maturity genes affects photoperiod insensitivity and PHYA-regulated post-flowering responses of soybean

(2013) Meilan Xu et al.   BMC PLANT BIOLOGY

Population Structure and Domestication Revealed by High-Depth Resequencing of Korean Cultivated and Wild Soybean Genomes

(2013) W.-H. Chung et al.   DNA RESEARCH

Genetic structure and a selected core set of brazilian soybean cultivars

(2013) Regina Helena Geribello Priolli et al.   GENETICS AND MOLECULAR BIOLOGY

The genetic base of Brazilian soybean cultivars: evolution over time and breeding implications

(2013) Philip Traldi Wysmierski et al.   GENETICS AND MOLECULAR BIOLOGY

A genomic variation map provides insights into the genetic basis of cucumber domestication and diversity

(2013) Jianjian Qi et al.   NATURE GENETICS

Soybean knowledge base (SoyKB): a web resource for integration of soybean translational genomics and molecular breeding

(2013) Trupti Joshi et al.   NUCLEIC ACIDS RESEARCH

Genetic Variation in Soybean at the Maturity Locus E4 Is Involved in Adaptation to Long Days at High Latitudes

(2013) Yasutaka Tsubokura et al.   Agronomy-Basel

Soybean Knowledge Base (SoyKB): a web resource for soybean translational genomics

(2012) Trupti Joshi et al.   BMC GENOMICS

Identification of QTL controlling post-flowering period in soybean

(2012) Kunihiko Komatsu et al.   BREEDING SCIENCE

Bayesian mapping of quantitative trait loci (QTL) controlling soybean cyst nematode resistant

(2012) Osvin Arriagada et al.   EUPHYTICA

cn.MOPS: mixture of Poissons for discovering copy number variations in next-generation sequencing data with a low false discovery rate

(2012) Günter Klambauer et al.   NUCLEIC ACIDS RESEARCH

Positional cloning and characterization reveal the molecular basis for soybean maturity locus E1 that regulates photoperiodic flowering

(2012) Z. Xia et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Mapping of quantitative trait loci for canopy-wilting trait in soybean (Glycine max L. Merr)

(2012) Hussein Abdel-Haleem et al.   THEORETICAL AND APPLIED GENETICS

The variant call format and VCFtools

(2011) P. Danecek et al.   BIOINFORMATICS

A Map-Based Cloning Strategy Employing a Residual Heterozygous Line Reveals that theGIGANTEAGene Is Involved in Soybean Maturity and Flowering

(2011) Satoshi Watanabe et al.   GENETICS

MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods

(2011) K. Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

Resequencing 50 accessions of cultivated and wild rice yields markers for identifying agronomically important genes

(2011) Xun Xu et al.   NATURE BIOTECHNOLOGY

QTL Mapping of Isoflavone, Oil and Protein Contents in Soybean (Glycine max L. Merr.)

(2010) Hui-zhen LIANG et al.   Agricultural Sciences in China

QTL analysis of root traits as related to phosphorus efficiency in soybean

(2010) Quan Liang et al.   ANNALS OF BOTANY

Identification of genomic regions determining flower and pod numbers development in soybean (Glycine max L.)

(2010) Dan Zhang et al.   Journal of Genetics and Genomics

Genome sequence of the palaeopolyploid soybean

(2010) Jeremy Schmutz et al.   NATURE

Resequencing of 31 wild and cultivated soybean genomes identifies patterns of genetic diversity and selection

(2010) Hon-Ming Lam et al.   NATURE GENETICS

Whole-genome sequencing and intensive analysis of the undomesticated soybean (Glycine soja Sieb. and Zucc.) genome

(2010) M. Y. Kim et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Novel quantitative trait loci for broad-based resistance to soybean cyst nematode (Heterodera glycines Ichinohe) in soybean PI 567516C

(2010) Tri D. Vuong et al.   THEORETICAL AND APPLIED GENETICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Map-Based Cloning of the Gene Associated With the Soybean Maturity Locus E3

(2009) Satoshi Watanabe et al.   GENETICS

Mapping QTLs for seed yield and drought susceptibility index in soybean (Glycine max L.) across different environments

(2009) Weijun Du et al.   Journal of Genetics and Genomics

SoyBase, the USDA-ARS soybean genetics and genomics database

(2009) David Grant et al.   NUCLEIC ACIDS RESEARCH

Genetic relationship between lipid content and linolenic acid concentration in soybean seeds

(2008) Masayuki Shibata et al.   BREEDING SCIENCE

Population-specific QTLs and their different epistatic interactions for pod dehiscence in soybean [Glycine max (L.) Merr.]

(2008) Sung-Taeg Kang et al.   EUPHYTICA

Genetic Redundancy in Soybean Photoresponses Associated With Duplication of the Phytochrome A Gene

(2008) B. Liu et al.   GENETICS

Sequencing of natural strains of Arabidopsis thaliana with short reads

(2008) S. Ossowski et al.   GENOME RESEARCH

Genomewide SNP assay reveals mutations underlying Parkinson disease

(2007) Javier Simon-Sanchez et al.   HUMAN MUTATION