An integrated in silico approach for functional and structural impact of non- synonymous SNPs in the MYH1 gene in Jeju Native Pigs

Evaluation of body growth and immunity-related differentially expressed genes through deep RNA sequencing in the piglets of Jeju native pig and Berkshire

(2015) M. Ghosh et al.   ANIMAL GENETICS

Genome-wide detection and characterization of positive selection in Korean Native Black Pig from Jeju Island

(2015) Jaemin Kim et al.   BMC GENETICS

Genome-wide association analysis reveals genetic loci and candidate genes for meat quality traits in Chinese Laiwu pigs

(2015) Xinwei Xiong et al.   MAMMALIAN GENOME

Developmental progress and current status of the Animal QTLdb

(2015) Zhi-Liang Hu et al.   NUCLEIC ACIDS RESEARCH

QTL analysis of body weight and carcass body length traits in an F2intercross between Landrace and Korean native pigs

(2014) C. K. Yoo et al.   ANIMAL GENETICS

Comparative transcriptomic analysis by RNA-seq to discern differential expression of genes in liver and muscle tissues of adult Berkshire and Jeju Native Pig

(2014) Simrinder Singh Sodhi et al.   GENE

Co-Expression Analysis of Fetal Weight-Related Genes in Ovine Skeletal Muscle during Mid and Late Fetal Development Stages

(2014) Lingyang Xu et al.   International Journal of Biological Sciences

Predicting Disease-Related Proteins Based on Clique Backbone in Protein-Protein Interaction Network

(2014) Lei Yang et al.   International Journal of Biological Sciences

Glycine Stimulates Protein Synthesis and Inhibits Oxidative Stress in Pig Small Intestinal Epithelial Cells

(2014) Weiwei Wang et al.   JOURNAL OF NUTRITION

Application to proteomics to understand and modify meat quality

(2014) M. Gobert et al.   MEAT SCIENCE

An Approach to Identify SNPs in the Gene Encoding Acetyl-CoA Acetyltransferase-2 (ACAT-2) and Their Proposed Role in Metabolic Processes in Pig

(2014) Simrinder Singh Sodhi et al.   PLoS One

Large-scale gene function analysis with the PANTHER classification system

(2013) Huaiyu Mi et al.   Nature Protocols

Integrative approaches for finding modular structure in biological networks

(2013) Koyel Mitra et al.   NATURE REVIEWS GENETICS

HLA-DRB1*1501 and VDR polymorphisms and survival of Mycobacterium tuberculosis in human macrophages exposed to inhalable microparticles

(2013) Amit K Singh et al.   PHARMACOGENOMICS

Identification of Genome-Wide Copy Number Variations among Diverse Pig Breeds Using SNP Genotyping Arrays

(2013) Jiying Wang et al.   PLoS One

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

(2013) Daehwan Kim et al.   GENOME BIOLOGY

Resolving candidate genes of mouse skeletal muscle QTL via RNA-Seq and expression network analyses

(2012) Arimantas Lionikas et al.   BMC GENOMICS

Differential transcriptional analysis between red and white skeletal muscle of Chinese Meishan pigs

(2012) Yang Li et al.   International Journal of Biological Sciences

Genome-Wide Association Analysis of Meat Quality Traits in a Porcine Large White × Minzhu Intercross Population

(2012) Weizhen Luo et al.   International Journal of Biological Sciences

Single nucleotide polymorphisms, haplotypes and combined genotypes in MYH3 gene and their associations with growth and carcass traits in Qinchuan cattle

(2012) Lijun Wang et al.   MOLECULAR BIOLOGY REPORTS

Molecular cloning, sequence identification and expression analysis of novel caprine MYLPF gene

(2012) Honggang Xu et al.   MOLECULAR BIOLOGY REPORTS

Primer3—new capabilities and interfaces

(2012) Andreas Untergasser et al.   NUCLEIC ACIDS RESEARCH

STRING v9.1: protein-protein interaction networks, with increased coverage and integration

(2012) Andrea Franceschini et al.   NUCLEIC ACIDS RESEARCH

Computational Refinement of Functional Single Nucleotide Polymorphisms Associated with ATM Gene

(2012) C. George Priya Doss et al.   PLoS One

QTL analysis of white blood cell, platelet and red blood cell-related traits in an F2 intercross between Landrace and Korean native pigs

(2011) I. C. Cho et al.   ANIMAL GENETICS

Genotype and SNP calling from next-generation sequencing data

(2011) Rasmus Nielsen et al.   NATURE REVIEWS GENETICS

Identification of Novel SNPs in Glioblastoma Using Targeted Resequencing

(2011) Andreas Keller et al.   PLoS One

BioGraph: unsupervised biomedical knowledge discovery via automated hypothesis generation

(2011) Anthony ML Liekens et al.   GENOME BIOLOGY

Protein structure analysis of mutations causing inheritable diseases. An e-Science approach with life scientist friendly interfaces

(2010) Hanka Venselaar et al.   BMC BIOINFORMATICS

A method and server for predicting damaging missense mutations

(2010) Ivan A Adzhubei et al.   NATURE METHODS

CCDB: a curated database of genes involved in cervix cancer

(2010) S. M. Agarwal et al.   NUCLEIC ACIDS RESEARCH

Automated inference of molecular mechanisms of disease from amino acid substitutions

(2009) B. Li et al.   BIOINFORMATICS

Mining for single nucleotide polymorphisms in pig genome sequence data

(2009) Hindrik HD Kerstens et al.   BMC GENOMICS

The MIQE Guidelines: Minimum Information for Publication of Quantitative Real-Time PCR Experiments

(2009) S. A. Bustin et al.   CLINICAL CHEMISTRY

A Bioinformatics Approach for the Phenotype Prediction of Nonsynonymous Single Nucleotide Polymorphisms in Human Cytochromes P450

(2009) L.-L. Wang et al.   DRUG METABOLISM AND DISPOSITION

Pig KALRN, MYH1, MLC2V, SNX13, AK1, and PPIA loci RH mapping and chromosome position refining

(2009) C. Gorni et al.   GENETICS AND MOLECULAR RESEARCH

Working around the clock: circadian rhythms and skeletal muscle

(2009) Xiping Zhang et al.   JOURNAL OF APPLIED PHYSIOLOGY

ToppGene Suite for gene list enrichment analysis and candidate gene prioritization

(2009) J. Chen et al.   NUCLEIC ACIDS RESEARCH

A three-state prediction of single point mutations on protein stability changes

(2008) Emidio Capriotti et al.   BMC BIOINFORMATICS

Meat quality is associated with muscle metabolic status but not contractile myofiber type composition in premature pigs

(2008) X. Li et al.   MEAT SCIENCE