A Systematic Review on Literature-based Discovery

Neural networks for link prediction in realistic biomedical graphs: a multi-dimensional evaluation of graph embedding-based approaches

(2018) Gamal Crichton et al.   BMC BIOINFORMATICS

SemaTyP: a knowledge graph based literature mining method for drug discovery

(2018) Shengtian Sang et al.   BMC BIOINFORMATICS

Outlier based literature exploration for cross-domain linking of Alzheimer’s disease and gut microbiota

(2017) Donatella Gubiani et al.   EXPERT SYSTEMS WITH APPLICATIONS

Automated extraction of potential migraine biomarkers using a semantic graph

(2017) Wytze J. Vlietstra et al.   JOURNAL OF BIOMEDICAL INFORMATICS

Literature Based Discovery: Models, methods, and trends

(2017) Sam Henry et al.   JOURNAL OF BIOMEDICAL INFORMATICS

Enriching plausible new hypothesis generation in PubMed

(2017) Seung Han Baek et al.   PLoS One

Advanced literature analysis in a Big Data world

(2016) Chris Cheadle et al.   Annals of the New York Academy of Sciences

The effect of word sense disambiguation accuracy on literature based discovery

(2016) Judita Preiss et al.   BMC Medical Informatics and Decision Making

ARN: analysis and prediction by adipogenic professional database

(2016) Yan Huang et al.   BMC Systems Biology

Discovering New Genes in the Pathways of Common Sporadic Neurodegenerative Diseases: A Bioinformatics Approach

(2016) Yong Hwan Kim et al.   JOURNAL OF ALZHEIMERS DISEASE

Spark, an application based on Serendipitous Knowledge Discovery

(2016) T. Elizabeth Workman et al.   JOURNAL OF BIOMEDICAL INFORMATICS

Using Literature-Based Discovery to Explain Adverse Drug Effects

(2016) Dimitar Hristovski et al.   JOURNAL OF MEDICAL SYSTEMS

Link Prediction on a Network of Co-occurring MeSH Terms: Towards Literature-based Discovery

(2016) Thomas Rindflesch et al.   METHODS OF INFORMATION IN MEDICINE

Context-driven automatic subgraph creation for literature-based discovery

(2015) Delroy Cameron et al.   JOURNAL OF BIOMEDICAL INFORMATICS

Exploring relation types for literature-based discovery

(2015) Judita Preiss et al.   JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION

Systematic analysis of the p53-related microRNAs in breast cancer revealing their essential roles in the cell cycle

(2015) ENXIANG ZHOU et al.   Oncology Letters

Networks of neuroinjury semantic predications to identify biomarkers for mild traumatic brain injury

(2015) Michael J Cairelli et al.   Journal of Biomedical Semantics

SemPathFinder: Semantic path analysis for discovering publicly unknown knowledge

(2015) Min Song et al.   Journal of Informetrics

Identifying plausible adverse drug reactions using knowledge extracted from the literature

(2014) Ning Shang et al.   JOURNAL OF BIOMEDICAL INFORMATICS

Gene–disease association with literature based enrichment

(2014) Guy Tsafnat et al.   JOURNAL OF BIOMEDICAL INFORMATICS

Applying MetaMap to Medline for identifying novel associations in a large clinical dataset: a feasibility analysis

(2014) David A Hanauer et al.   JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION

Simulation of Swanson's Literature-Based Discovery: Anandamide Treatment Inhibits Growth of Gastric Cancer Cells In Vitro and In Silico

(2014) Weiwei Dong et al.   PLoS One

Biomedical Hypothesis Generation by Text Mining and Gene Prioritization

(2014) Ingrid Petric et al.   PROTEIN AND PEPTIDE LETTERS

Literature-related discovery: common factors for Parkinson’s Disease and Crohn’s Disease

(2014) Ronald N. Kostoff   SCIENTOMETRICS

The contribution of syntactic–semantic approach to the search for complementary literatures for scientific or technical discovery

(2014) Jose M. Vicente-Gomila   SCIENTOMETRICS

Framing serendipitous information-seeking behavior for facilitating literature-based discovery: A proposed model

(2014) T. Elizabeth Workman et al.   Journal of the Association for Information Science and Technology

Automatic query expansion: A structural linguistic perspective

(2014) Michael Symonds et al.   Journal of the Association for Information Science and Technology

Biological network extraction from scientific literature: state of the art and challenges

(2013) C. Li et al.   BRIEFINGS IN BIOINFORMATICS

Finding linkage between technology and social issue: A Literature Based Discovery approach

(2013) Vitavin Ittipanuvat et al.   JOURNAL OF ENGINEERING AND TECHNOLOGY MANAGEMENT

Finding potentially new multimorbidity patterns of psychiatric and somatic diseases: exploring the use of literature-based discovery in primary care research

(2013) Rein Vos et al.   JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION

Entitymetrics: Measuring the Impact of Entities

(2013) Ying Ding et al.   PLoS One

Shedding light on a neglected area: a new approach to knowledge creation

(2013) Hiroko Nakamura et al.   Sustainability Science

Integration of Data from Omic Studies with the Literature-Based Discovery towards Identification of Novel Treatments for Neovascularization in Diabetic Retinopathy

(2013) Ales Maver et al.   Biomed Research International

Quantitative biomedical annotation using medical subject heading over-representation profiles (MeSHOPs)

(2012) Warren A Cheung et al.   BMC BIOINFORMATICS

Automatic retrieval of current evidence to support update of bibliography in clinical guidelines

(2012) A. Iruetaguena et al.   EXPERT SYSTEMS WITH APPLICATIONS

Discovering discovery patterns with predication-based Semantic Indexing

(2012) Trevor Cohen et al.   JOURNAL OF BIOMEDICAL INFORMATICS

A graph-based recovery and decomposition of Swanson’s hypothesis using semantic predications

(2012) Delroy Cameron et al.   JOURNAL OF BIOMEDICAL INFORMATICS

Structuring the Chinese disjointed literature-based knowledge discovery system: The key technologies to success

(2012) Qing Qian et al.   JOURNAL OF INFORMATION SCIENCE

Connecting the Dots between PubMed Abstracts

(2012) M. Shahriar Hossain et al.   PLoS One

Inferring novel gene-disease associations using Medical Subject Heading Over-representation Profiles

(2012) Warren A Cheung et al.   Genome Medicine

Literature-related discovery

(2011) Ronald N. Kostoff et al.   ANNUAL REVIEW OF INFORMATION SCIENCE AND TECHNOLOGY

Mining FDA drug labels using an unsupervised learning technique - topic modeling

(2011) Halil Bisgin et al.   BMC BIOINFORMATICS

Can the vector space model be used to identify biological entity activities?

(2011) Wesley D Maciel et al.   BMC GENOMICS

Combining literature text mining with microarray data: advances for system biology modeling

(2011) A. Faro et al.   BRIEFINGS IN BIOINFORMATICS

Literature mining, ontologies and information visualization for drug repurposing

(2011) C. Andronis et al.   BRIEFINGS IN BIOINFORMATICS

Literature-based discovery: Beyond the ABCs

(2011) Neil R. Smalheiser   JOURNAL OF THE AMERICAN SOCIETY FOR INFORMATION SCIENCE AND TECHNOLOGY

Mining of vaccine-associated IFN-γ gene interaction networks using the Vaccine Ontology

(2011) Arzucan Özgür et al.   Journal of Biomedical Semantics

MKEM: a Multi-level Knowledge Emergence Model for mining undiscovered public knowledge

(2010) Ali Z Ijaz et al.   BMC BIOINFORMATICS

Literature-based discovery of diabetes- and ROS-related targets

(2010) Junguk Hur et al.   BMC Medical Genomics

Outlier Detection in Cross-Context Link Discovery for Creative Literature Mining

(2010) I. Petric et al.   COMPUTER JOURNAL

Dragon exploratory system on Hepatitis C Virus (DESHCV)

(2010) Samuel K. Kwofie et al.   INFECTION GENETICS AND EVOLUTION

Mining connections between chemicals, proteins, and diseases extracted from Medline annotations

(2010) Nancy C. Baker et al.   JOURNAL OF BIOMEDICAL INFORMATICS

Chi-square-based Scoring Function for Categorization of MEDLINE Citations

(2010) A. Kastrin et al.   METHODS OF INFORMATION IN MEDICINE

Literature Mining for the Discovery of Hidden Connections between Drugs, Genes and Diseases

(2010) Raoul Frijters et al.   PLoS Computational Biology

Arrowsmith two-node search interface: A tutorial on finding meaningful links between two disparate sets of articles in MEDLINE

(2009) Neil R. Smalheiser et al.   COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE

Discovering implicit associations among critical biological entities

(2009) Kazuhiro Seki et al.   International Journal of Data Mining and Bioinformatics

Reflective Random Indexing and indirect inference: A scalable method for discovery of implicit connections

(2009) Trevor Cohen et al.   JOURNAL OF BIOMEDICAL INFORMATICS

Literature mining method RaJoLink for uncovering relations between biomedical concepts

(2008) Ingrid Petriĕ et al.   JOURNAL OF BIOMEDICAL INFORMATICS

A new evaluation methodology for literature-based discovery systems

(2008) Meliha Yetisgen-Yildiz et al.   JOURNAL OF BIOMEDICAL INFORMATICS

Anni 2.0: a multipurpose text-mining tool for the life sciences

(2008) Rob Jelier et al.   GENOME BIOLOGY