A divergent transcriptional landscape underpins the development and functional branching of MAIT cells

Divergent SATB1 expression across human life span and tissue compartments

(2019) Simone Nüssing et al.   IMMUNOLOGY AND CELL BIOLOGY

TCF-1 limits the formation of Tc17 cells via repression of the MAF–RORγt axis

(2019) Lisa A. Mielke et al.   JOURNAL OF EXPERIMENTAL MEDICINE

Differences in the molecular signatures of mucosal-associated invariant T cells and conventional T cells

(2019) Daeui Park et al.   Scientific Reports

The biology and functional importance of MAIT cells

(2019) Dale I. Godfrey et al.   NATURE IMMUNOLOGY

Molecular mechanisms of lineage decisions in metabolite-specific T cells

(2019) François Legoux et al.   NATURE IMMUNOLOGY

Differential surface phenotype and context-dependent reactivity of functionally diverse NKT cells

(2018) Garth Cameron et al.   IMMUNOLOGY AND CELL BIOLOGY

Human blood MAIT cell subsets defined using MR1 tetramers

(2018) Nicholas A Gherardin et al.   IMMUNOLOGY AND CELL BIOLOGY

An overview on the identification of MAIT cell antigens

(2018) Lars Kjer-Nielsen et al.   IMMUNOLOGY AND CELL BIOLOGY

MAIT cells and viruses

(2018) James E Ussher et al.   IMMUNOLOGY AND CELL BIOLOGY

Mucosal-associated invariant T cells in autoimmune and immune-mediated diseases

(2018) Ophélie Rouxel et al.   IMMUNOLOGY AND CELL BIOLOGY

MAIT cells and microbial immunity

(2018) Erin W Meermeier et al.   IMMUNOLOGY AND CELL BIOLOGY

Ontogeny of human mucosal-associated invariant T cells and related T cell subsets

(2018) Ghada Ben Youssef et al.   JOURNAL OF EXPERIMENTAL MEDICINE

C/EBPδ drives interactions between human MAIT cells and endothelial cells that are important for extravasation

(2018) Chang Hoon Lee et al.   eLife

High MDR-1 expression by MAIT cells confers resistance to cytotoxic but not immunosuppressive MDR-1 substrates

(2018) J.R. Fergusson et al.   CLINICAL AND EXPERIMENTAL IMMUNOLOGY

scPipe: A flexible R/Bioconductor preprocessing pipeline for single-cell RNA-sequencing data

(2018) Luyi Tian et al.   PLoS Computational Biology

CCR7 defines a precursor for murine iNKT cells in thymus and periphery

(2018) Haiguang Wang et al.   eLife

Tissue-resident MAIT cell populations in human oral mucosa exhibit an activated profile and produce IL-17

(2018) Michał J. Sobkowiak et al.   EUROPEAN JOURNAL OF IMMUNOLOGY

MicroRNA miR-181a/b-1 controls MAIT cell development

(2018) Samantha J Winter et al.   IMMUNOLOGY AND CELL BIOLOGY

A common transcriptomic program acquired in the thymus defines tissue residency of MAIT and NKT subsets

(2018) Marion Salou et al.   JOURNAL OF EXPERIMENTAL MEDICINE

The transcription factor c-Maf is essential for the commitment of IL-17-producing γδ T cells

(2018) Matthew K. Zuberbuehler et al.   NATURE IMMUNOLOGY

Reversed graph embedding resolves complex single-cell trajectories

(2017) Xiaojie Qiu et al.   NATURE METHODS

Stabilizing short-lived Schiff base derivatives of 5-aminouracils that activate mucosal-associated invariant T cells

(2017) Jeffrey Y. W. Mak et al.   Nature Communications

Essential Roles of SATB1 in Specifying T Lymphocyte Subsets

(2017) Kiyokazu Kakugawa et al.   Cell Reports

MAIT cells reside in the female genital mucosa and are biased towards IL-17 and IL-22 production in response to bacterial stimulation

(2016) A Gibbs et al.   Mucosal Immunology

Guidance of regulatory T cell development by Satb1-dependent super-enhancer establishment

(2016) Yohko Kitagawa et al.   NATURE IMMUNOLOGY

A three-stage intrathymic development pathway for the mucosal-associated invariant T cell lineage

(2016) Hui-Fern Koay et al.   NATURE IMMUNOLOGY

Innate-like functions of natural killer T cell subsets result from highly divergent gene programs

(2016) Isaac Engel et al.   NATURE IMMUNOLOGY

Multiple layers of transcriptional regulation by PLZF in NKT-cell development

(2016) Ai-Ping Mao et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Identification of phenotypically and functionally heterogeneous mouse mucosal-associated invariant T cells using MR1 tetramers

(2015) Azad Rahimpour et al.   JOURNAL OF EXPERIMENTAL MEDICINE

The transcription factor lymphoid enhancer factor 1 controls invariant natural killer T cell expansion and Th2-type effector differentiation

(2015) Tiffany Carr et al.   JOURNAL OF EXPERIMENTAL MEDICINE

Cell-autonomous requirement for TCF1 and LEF1 in the development of Natural Killer T cells

(2015) Rosa Berga-Bolaños et al.   MOLECULAR IMMUNOLOGY

limma powers differential expression analyses for RNA-sequencing and microarray studies

(2015) Matthew E. Ritchie et al.   NUCLEIC ACIDS RESEARCH

A molecular basis underpinning the T cell receptor heterogeneity of mucosal-associated invariant T cells

(2014) Sidonia B.G. Eckle et al.   JOURNAL OF EXPERIMENTAL MEDICINE

Differential Requirement for CCR4 and CCR7 during the Development of Innate and Adaptive   T Cells in the Adult Thymus

(2014) J. E. Cowan et al.   JOURNAL OF IMMUNOLOGY

T-cell activation by transitory neo-antigens derived from distinct microbial pathways

(2014) Alexandra J. Corbett et al.   NATURE

Parallel T-cell cloning and deep sequencing of human MAIT cells reveal stable oligoclonal TCRβ repertoire

(2014) Marco Lepore et al.   Nature Communications

Acquisition of innate-like microbial reactivity in mucosal tissues during human fetal MAIT-cell development

(2014) Edwin Leeansyah et al.   Nature Communications

CD161 Defines a Transcriptional and Functional Phenotype across Distinct Human T Cell Lineages

(2014) Joannah R. Fergusson et al.   Cell Reports

Repression of the Transcription Factor Bach2 Contributes to Predisposition of IgG1 Memory B Cells toward Plasma Cell Differentiation

(2013) Kohei Kometani et al.   IMMUNITY

Double Positive Thymocytes Select Mucosal-Associated Invariant T Cells

(2013) N. Seach et al.   JOURNAL OF IMMUNOLOGY

IL-7 Licenses Activation of Human Liver Intrasinusoidal Mucosal-Associated Invariant T Cells

(2013) X.-Z. Tang et al.   JOURNAL OF IMMUNOLOGY

The Subread aligner: fast, accurate and scalable read mapping by seed-and-vote

(2013) Yang Liao et al.   NUCLEIC ACIDS RESEARCH

The TCF-1 and LEF-1 Transcription Factors Have Cooperative and Opposing Roles in T Cell Development and Malignancy

(2012) Shuyang Yu et al.   IMMUNITY

Differential expression analysis of multifactor RNA-Seq experiments with respect to biological variation

(2012) Davis J. McCarthy et al.   NUCLEIC ACIDS RESEARCH

Massively parallel sequencing of the mouse exome to accurately identify rare, induced mutations: an immediate source for thousands of new mouse models

(2012) T. D. Andrews et al.   Open Biology

Human MAIT cells are xenobiotic-resistant, tissue-targeted, CD161hi IL-17-secreting T cells

(2010) M. Dusseaux et al.   BLOOD

Gene ontology analysis for RNA-seq: accounting for selection bias

(2010) Matthew D Young et al.   GENOME BIOLOGY

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Stepwise Development of MAIT Cells in Mouse and Human

(2009) Emmanuel Martin et al.   PLOS BIOLOGY