Improved HLA typing of Class I and Class II alleles from next‐generation sequencing data

Benchmarking the HLA typing performance of Polysolver and Optitype in 50 Danish parental trios

(2018) Maria Luisa Matey-Hernandez et al.   BMC BIOINFORMATICS

ALPHLARD: a Bayesian method for analyzing HLA genes from whole genome sequence data

(2018) Shuto Hayashi et al.   BMC GENOMICS

HLA-HD: An accurate HLA typing algorithm for next-generation sequencing data

(2017) Shuji Kawaguchi et al.   HUMAN MUTATION

Fast and accurate HLA typing from short-read next-generation sequence data with xHLA

(2017) Chao Xie et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Distinguishing functional polymorphism from random variation in the sequences of >10,000 HLA-A, -B and -C alleles

(2017) James Robinson et al.   PLoS Genetics

Accuracy of Programs for the Determination of Human Leukocyte Antigen Alleles from Next-Generation Sequencing Data

(2017) Antti Larjo et al.   Frontiers in Immunology

Generation of Full-Length Class I Human Leukocyte Antigen Gene Consensus Sequences for Novel Allele Characterization

(2016) P. M. Clark et al.   CLINICAL CHEMISTRY

Allele Frequencies Net Database: Improvements for storage of individual genotypes and analysis of existing data

(2016) Eduardo Jose Melos dos Santos et al.   HUMAN IMMUNOLOGY

Comparison of exome-based HLA class I genotyping tools: identification of platform-specific genotyping errors

(2016) Kazuma Kiyotani et al.   JOURNAL OF HUMAN GENETICS

High-Accuracy HLA Type Inference from Whole-Genome Sequencing Data Using Population Reference Graphs

(2016) Alexander T. Dilthey et al.   PLoS Computational Biology

A global reference for human genetic variation

(2015) Richard A. Gibbs et al.   NATURE

Comprehensive analysis of cancer-associated somatic mutations in class I HLA genes

(2015) Sachet A Shukla et al.   NATURE BIOTECHNOLOGY

HLAreporter: a tool for HLA typing from next generation sequencing data

(2015) Yazhi Huang et al.   Genome Medicine

OptiType: precision HLA typing from next-generation sequencing data

(2014) András Szolek et al.   BIOINFORMATICS

The IPD and IMGT/HLA database: allele variant databases

(2014) James Robinson et al.   NUCLEIC ACIDS RESEARCH

Allele frequency net 2015 update: new features for HLA epitopes, KIR and disease and HLA adverse drug reaction associations

(2014) Faviel F. González-Galarza et al.   NUCLEIC ACIDS RESEARCH

HLA Diversity in the 1000 Genomes Dataset

(2014) Pierre-Antoine Gourraud et al.   PLoS One

Major Histocompatibility Complex Genomics and Human Disease

(2013) John Trowsdale et al.   Annual Review of Genomics and Human Genetics

ATHLATES: accurate typing of human leukocyte antigen through exome sequencing

(2013) Chang Liu et al.   NUCLEIC ACIDS RESEARCH

Common and well-documented HLA alleles: 2012 update to the CWD catalogue

(2013) S. J. Mack et al.   TISSUE ANTIGENS

Derivation of HLA types from shotgun sequence datasets

(2012) René L Warren et al.   Genome Medicine

Next-generation sequencing for HLA typing of class I loci

(2011) Rachel L Erlich et al.   BMC GENOMICS

Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega

(2011) F. Sievers et al.   Molecular Systems Biology

HLA DNA Sequence Variation among Human Populations: Molecular Signatures of Demographic and Selective Events

(2011) Stéphane Buhler et al.   PLoS One

Fast and SNP-tolerant detection of complex variants and splicing in short reads

(2010) T. D. Wu et al.   BIOINFORMATICS

Nomenclature for factors of the HLA system, 2010

(2010) S. G. E. Marsh et al.   TISSUE ANTIGENS

The HLA genomic loci map: expression, interaction, diversity and disease

(2009) Takashi Shiina et al.   JOURNAL OF HUMAN GENETICS