Chromosome genome assembly and annotation of the yellowbelly pufferfish with PacBio and Hi-C sequencing data

Global conservation status of marine pufferfishes (Tetraodontiformes: Tetraodontidae)

(2018) Emilie Stump et al.   Global Ecology and Conservation

A draft genome assembly of the Chinese sillago (Sillago sinica), the first reference genome for Sillaginidae fishes

(2018) Shengyong Xu et al.   GigaScience

Chromosomal-level assembly of yellow catfish genome using third-generation DNA sequencing and Hi-C analysis

(2018) Gaorui Gong et al.   GigaScience

Hi-C 2.0: An optimized Hi-C procedure for high-resolution genome-wide mapping of chromosome conformation

(2017) Houda Belaghzal et al.   METHODS

Phased diploid genome assembly with single-molecule real-time sequencing

(2016) Chen-Shan Chin et al.   NATURE METHODS

BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs

(2015) Felipe A. Simão et al.   BIOINFORMATICS

Draft Sequencing and Analysis of the Genome of Pufferfish Takifugu flavidus

(2014) Yang Gao et al.   DNA RESEARCH

The complete mitochondrial genome sequence ofTakifugu flavidus(Tetraodontiformes: Tetrodontidae)

(2014) Yongfu Liu et al.   Mitochondrial DNA

Pilon: An Integrated Tool for Comprehensive Microbial Variant Detection and Genome Assembly Improvement

(2014) Bruce J. Walker et al.   PLoS One

Chromosome-scale scaffolding of de novo genome assemblies based on chromatin interactions

(2013) Joshua N Burton et al.   NATURE BIOTECHNOLOGY

Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data

(2013) Chen-Shan Chin et al.   NATURE METHODS

Ensembl 2014

(2013) Paul Flicek et al.   NUCLEIC ACIDS RESEARCH

Comparison of nutritional composition of farmed pufferfish muscles among Fugu obscurus, Fugu flavidus and Fugu rubripes

(2012) Ning-ping Tao et al.   JOURNAL OF FOOD COMPOSITION AND ANALYSIS

Iterative correction of Hi-C data reveals hallmarks of chromosome organization

(2012) Maxim Imakaev et al.   NATURE METHODS

A fast, lock-free approach for efficient parallel counting of occurrences of k-mers

(2011) Guillaume Marçais et al.   BIOINFORMATICS

Effects of salinity on embryos and larvae of tawny puffer Takifugu flavidus

(2010) Genyu Zhang et al.   AQUACULTURE

Effects of temperature on fertilized eggs and larvae of tawny puffer Takifugu flavidus

(2010) Yong-Hai Shi et al.   AQUACULTURE RESEARCH

Effects of temperature and salinity on oxygen consumption of tawny puffer Takifugu flavidus juvenile

(2010) Yonghai Shi et al.   AQUACULTURE RESEARCH

TopHat: discovering splice junctions with RNA-Seq

(2009) Cole Trapnell et al.   BIOINFORMATICS

Isolation and characterization of polymorphic microsatellite loci from a dinucleotide-enriched genomic library of obscure puffer (Takifugu obscurus) and cross-species amplification

(2008) Hongyu Ma et al.   CONSERVATION GENETICS