Generation of an integrated Hieracium genomic and transcriptomic resource enables exploration of small RNA pathways during apomixis initiation

Transcript Abundance Explains mRNA Mobility Data inArabidopsis thaliana

(2016) Alexander Calderwood et al.   PLANT CELL

The expanding world of small RNAs in plants

(2015) Filipe Borges et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

A parthenogenesis gene of apomict origin elicits embryo formation from unfertilized eggs in a sexual plant

(2015) Joann A. Conner et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A reference genetic linkage map of apomictic Hieracium species based on expressed markers derived from developing ovule transcripts

(2014) Kenta Shirasawa et al.   ANNALS OF BOTANY

The Genetic Control of Apomixis: Asexual Seed Formation

(2014) Melanie L. Hand et al.   GENETICS

Evolution of apomixis loci in Pilosella and Hieracium (Asteraceae) inferred from the conservation of apomixis-linked markers in natural and experimental populations

(2014) M L Hand et al.   HEREDITY

Identification and characterization of Argonaute gene family and meiosis-enriched Argonaute during sporogenesis in maize

(2014) Lihong Zhai et al.   Journal of Integrative Plant Biology

Rice germline-specific Argonaute MEL1 protein binds to phasiRNAs generated from more than 700 lincRNAs

(2014) Reina Komiya et al.   PLANT JOURNAL

Temporal patterns of gene expression in developing maize endosperm identified through transcriptome sequencing

(2014) G. Li et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Virus infection triggers widespread silencing of host genes by a distinct class of endogenous siRNAs inArabidopsis

(2014) Mengji Cao et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Apomictic and Sexual Germline Development Differ with Respect to Cell Cycle, Transcriptional, Hormonal and Epigenetic Regulation

(2014) Anja Schmidt et al.   PLoS Genetics

On the role of some ARGONAUTE proteins in meiosis and DNA repair in Arabidopsis thaliana

(2014) Cecilia Oliver et al.   Frontiers in Plant Science

Sequence alignment visualization in HTML5 without Java

(2013) C. Gille et al.   BIOINFORMATICS

Molecular cloning and characterisation of SlAGO family in tomato

(2013) Zhiqiang Xian et al.   BMC PLANT BIOLOGY

MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0

(2013) Koichiro Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

Spatiotemporal signalling in plant development

(2013) Erin Sparks et al.   NATURE REVIEWS GENETICS

TheLOSS OF APOMEIOSIS(LOA) locus inHieracium praealtumcan function independently of the associated large-scale repetitive chromosomal structure

(2013) Yoshiko Kotani et al.   NEW PHYTOLOGIST

miRBase: annotating high confidence microRNAs using deep sequencing data

(2013) Ana Kozomara et al.   NUCLEIC ACIDS RESEARCH

Lessons on RNA Silencing Mechanisms in Plants from Eukaryotic Argonaute Structures

(2013) Christian Poulsen et al.   PLANT CELL

Enlarging Cells Initiating Apomixis in Hieracium praealtum Transition to an Embryo Sac Program prior to Entering Mitosis

(2013) T. Okada et al.   PLANT PHYSIOLOGY

An Ultra-High-Density, Transcript-Based, Genetic Map of Lettuce

(2013) Maria José Truco et al.   G3-Genes Genomes Genetics

Defining and searching for structural motifs using DeepView/Swiss-PdbViewer

(2012) Maria U Johansson et al.   BMC BIOINFORMATICS

Transcriptome-scale homoeolog-specific transcript assemblies of bread wheat

(2012) Andreas W Schreiber et al.   BMC GENOMICS

A Role for Small RNAs in DNA Double-Strand Break Repair

(2012) Wei Wei et al.   CELL

Somatic small RNA pathways promote the mitotic events of megagametogenesis during female reproductive development in Arabidopsis

(2012) M. R. Tucker et al.   DEVELOPMENT

Genome-wide identification of Dicer-like, Argonaute and RNA-dependent RNA polymerase gene families and their expression analyses in response to viral infection and abiotic stresses in Solanum lycopersicum

(2012) Miao Bai et al.   GENE

The tomato genome sequence provides insights into fleshy fruit evolution

(2012)   NATURE

The Crystal Structure of Human Argonaute2

(2012) N. T. Schirle et al.   SCIENCE

Isolation and analysis of high quality nuclear DNA with reduced organellar DNA for plant genome sequencing and resequencing

(2011) Kerry A Lutz et al.   BMC BIOTECHNOLOGY

Analysis of conserved microRNAs in floral tissues of sexual and apomictic Boechera species

(2011) Samuel Amiteye et al.   BMC GENOMICS

Arabidopsis WIH1 and WIH2 Genes Act in the Transition from Somatic to Reproductive Cell Fate

(2011) Diana Lieber et al.   CURRENT BIOLOGY

Apomixis in hawkweed: Mendel's experimental nemesis

(2011) A. M. G. Koltunow et al.   JOURNAL OF EXPERIMENTAL BOTANY

Transcriptome Analysis of Differentially Expressed Genes During Embryo Sac Development in Apomeiotic Non-Parthenogenetic Interspecific Hybrid of Pennisetum glaucum

(2011) Pranav Pankaj Sahu et al.   MOLECULAR BIOTECHNOLOGY

Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega

(2011) F. Sievers et al.   Molecular Systems Biology

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

Massive Analysis of Rice Small RNAs: Mechanistic Implications of Regulated MicroRNAs and Variants for Differential Target RNA Cleavage

(2011) D.-H. Jeong et al.   PLANT CELL

The 21-Nucleotide, but Not 22-Nucleotide, Viral Secondary Small Interfering RNAs Direct Potent Antiviral Defense by Two Cooperative Argonautes inArabidopsis thaliana

(2011) Xian-Bing Wang et al.   PLANT CELL

Production of Viable Gametes without Meiosis in Maize Deficient for an ARGONAUTE Protein

(2011) Manjit Singh et al.   PLANT CELL

Identification and characterization of Dicer-like, Argonaute and RNA-dependent RNA polymerase gene families in maize

(2011) Yexiong Qian et al.   PLANT CELL REPORTS

Sexual reproduction is the default mode in apomictic Hieracium subgenus Pilosella, in which two dominant loci function to enable apomixis

(2011) Anna M. G. Koltunow et al.   PLANT JOURNAL

EXORDIUM-LIKE1 Promotes Growth during Low Carbon Availability in Arabidopsis

(2011) F. Schroder et al.   PLANT PHYSIOLOGY

Chromosomes Carrying Meiotic Avoidance Loci in Three Apomictic Eudicot Hieracium Subgenus Pilosella Species Share Structural Features with Two Monocot Apomicts

(2011) T. Okada et al.   PLANT PHYSIOLOGY

Control of female gamete formation by a small RNA pathway in Arabidopsis

(2010) Vianey Olmedo-Monfil et al.   NATURE

Apomictic and Sexual Ovules of Boechera Display Heterochronic Global Gene Expression Patterns

(2010) T. F. Sharbel et al.   PLANT CELL

Inactivation of a DNA Methylation Pathway in Maize Reproductive Organs Results in Apomixis-Like Phenotypes

(2010) Marcelina Garcia-Aguilar et al.   PLANT CELL

Genome size in Hieracium subgenus Hieracium (Asteraceae) is strongly correlated with major phylogenetic groups

(2009) Jindřich Chrtek et al.   ANNALS OF BOTANY

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

The extracellular EXO protein mediates cell expansion in Arabidopsis leaves

(2009) Florian Schröder et al.   BMC PLANT BIOLOGY

VirtualPlant: A Software Platform to Support Systems Biology Research

(2009) M. S. Katari et al.   PLANT PHYSIOLOGY

Genome-wide identification, organization and phylogenetic analysis of Dicer-like, Argonaute and RNA-dependent RNA Polymerase gene families and their expression analysis during reproductive development and stress in rice

(2008) Meenu Kapoor et al.   BMC GENOMICS

Sorting of Small RNAs into Arabidopsis Argonaute Complexes Is Directed by the 5′ Terminal Nucleotide

(2008) Shijun Mi et al.   CELL

A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains

(2008) Q.-H. Zhu et al.   GENOME RESEARCH

PROMALS3D: a tool for multiple protein sequence and structure alignments

(2008) Jimin Pei et al.   NUCLEIC ACIDS RESEARCH