NOBLE – Flexible concept recognition for large-scale biomedical natural language processing

Large-scale biomedical concept recognition: an evaluation of current automatic annotators and their parameters

(2014) Christopher Funk et al.   BMC BIOINFORMATICS

caTIES: a grid based system for coding and retrieval of surgical pathology reports and tissue specimens in support of translational research

(2014) Rebecca S Crowley et al.   JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION

An overview of MetaMap: historical perspective and recent advances

(2014) Alan R Aronson et al.   JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION

Bootstrapping a de-identification system for narrative patient records: Cost-performance tradeoffs

(2013) David Hanauer et al.   INTERNATIONAL JOURNAL OF MEDICAL INFORMATICS

Formative Evaluation of Ontology Learning Methods for Entity Discovery by Using Existing Ontologies as Reference Standards

(2013) K. Liu et al.   METHODS OF INFORMATION IN MEDICINE

Concept annotation in the CRAFT corpus

(2012) Michael Bada et al.   BMC BIOINFORMATICS

Recognition of medication information from discharge summaries using ensembles of classifiers

(2012) Son Doan et al.   BMC Medical Informatics and Decision Making

A system for coreference resolution for the clinical narrative

(2012) J. Zheng et al.   JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION

The gene normalization task in BioCreative III

(2011) Zhiyong Lu et al.   BMC BIOINFORMATICS

Natural language processing: an introduction

(2011) Prakash M Nadkarni et al.   JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION

Natural Language Processing methods and systems for biomedical ontology learning

(2010) Kaihong Liu et al.   JOURNAL OF BIOMEDICAL INFORMATICS

Improving textual medication extraction using combined conditional random fields and rule-based systems

(2010) Domonkos Tikk et al.   JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION

Mayo clinical Text Analysis and Knowledge Extraction System (cTAKES): architecture, component evaluation and applications

(2010) Guergana K Savova et al.   JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION

Effectiveness of Lexico-syntactic Pattern Matching for Ontology Enrichment with Clinical Documents

(2010) K. Liu et al.   METHODS OF INFORMATION IN MEDICINE

Comparison of concept recognizers for building the Open Biomedical Annotator

(2009) Nigam H Shah et al.   BMC BIOINFORMATICS

Integrating high dimensional bi-directional parsing models for gene mention tagging

(2008) C.-N. Hsu et al.   BIOINFORMATICS

Getting Started in Text Mining

(2008) K. Bretonnel Cohen et al.   PLoS Computational Biology