Implementation of a methodology for determining elastic properties of lipid assemblies from molecular dynamics simulations

The SwissLipids knowledgebase for lipid biology

(2015) Lucila Aimo et al.   BIOINFORMATICS

Tuning Membrane Thickness Fluctuations in Model Lipid Bilayers

(2015) Rana Ashkar et al.   BIOPHYSICAL JOURNAL

Effects of Lipid Composition on Bilayer Membranes Quantified by All-Atom Molecular Dynamics

(2015) Wei Ding et al.   JOURNAL OF PHYSICAL CHEMISTRY B

Molecular origins of bending rigidity in lipids with isolated and conjugated double bonds: The effect of cholesterol

(2014) G. Khelashvili et al.   CHEMISTRY AND PHYSICS OF LIPIDS

Curvature and Lipid Packing Modulate the Elastic Properties of Lipid Assemblies: Comparing HII and Lamellar Phases

(2014) Niklaus Johner et al.   Journal of Physical Chemistry Letters

Determination of Biomembrane Bending Moduli in Fully Atomistic Simulations

(2014) Zachary A. Levine et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Protein and Lipid Interactions Driving Molecular Mechanisms of in meso Crystallization

(2014) Niklaus Johner et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

OpenStructure: an integrated software framework for computational structural biology

(2013) M. Biasini et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

How sterol tilt regulates properties and organization of lipid membranes and membrane insertions

(2013) George Khelashvili et al.   CHEMISTRY AND PHYSICS OF LIPIDS

Calculating the Bending Modulus for Multicomponent Lipid Membranes in Different Thermodynamic Phases

(2013) George Khelashvili et al.   Journal of Chemical Theory and Computation

How Cholesterol Tilt Modulates the Mechanical Properties of Saturated and Unsaturated Lipid Membranes

(2013) George Khelashvili et al.   JOURNAL OF PHYSICAL CHEMISTRY B

Membrane Driven Spatial Organization of GPCRs

(2013) Sayan Mondal et al.   Scientific Reports

Determining Biomembrane Bending Rigidities from Simulations of Modest Size

(2012) Max C. Watson et al.   PHYSICAL REVIEW LETTERS

Interpretation of Fluctuation Spectra in Lipid Bilayer Simulations

(2011) Erik G. Brandt et al.   BIOPHYSICAL JOURNAL

Lipidomics at the Interface of Structure and Function in Systems Biology

(2011) Richard W. Gross et al.   CHEMISTRY & BIOLOGY

Impact of sterol tilt on membrane bending rigidity in cholesterol and 7DHC-containing DMPC membranes

(2011) George Khelashvili et al.   Soft Matter

OpenStructure: a flexible software framework for computational structural biology

(2010) Marco Biasini et al.   BIOINFORMATICS

Cholesterol Orientation and Tilt Modulus in DMPC Bilayers

(2010) George Khelashvili et al.   JOURNAL OF PHYSICAL CHEMISTRY B

Update of the CHARMM All-Atom Additive Force Field for Lipids: Validation on Six Lipid Types

(2010) Jeffery B. Klauda et al.   JOURNAL OF PHYSICAL CHEMISTRY B

Lipidomics: coming to grips with lipid diversity

(2010) Andrej Shevchenko et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Mechanisms Shaping the Membranes of Cellular Organelles

(2009) Yoko Shibata et al.   Annual Review of Cell and Developmental Biology

Refinement of Protein Structures into Low-Resolution Density Maps Using Rosetta

(2009) Frank DiMaio et al.   JOURNAL OF MOLECULAR BIOLOGY

Emerging roles for lipids in shaping membrane-protein function

(2009) Rob Phillips et al.   NATURE

Protein modulation of lipids, and vice-versa, in membranes

(2008) Derek Marsh   BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES

Membrane lipids: where they are and how they behave

(2008) Gerrit van Meer et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Mechanics of membrane fusion

(2008) Leonid V Chernomordik et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY