Comprehensive anatomic ontologies for lung development: A comparison of alveolar formation and maturation within mouse and human lung

Time-resolved proteome profiling of normal lung development

(2018) Ahmed Moghieb et al.   AMERICAN JOURNAL OF PHYSIOLOGY-LUNG CELLULAR AND MOLECULAR PHYSIOLOGY

Dissociation, Cellular Isolation and Initial Molecular Characterization of Neonatal and Pediatric Human Lung Tissues.

(2018) Gautam Bandyopadhyay et al.   AMERICAN JOURNAL OF PHYSIOLOGY-LUNG CELLULAR AND MOLECULAR PHYSIOLOGY

Reconstructing differentiation networks and their regulation from time series single-cell expression data

(2018) Jun Ding et al.   GENOME RESEARCH

Brain maps 4.0-Structure of the rat brain : An open access atlas with global nervous system nomenclature ontology and flatmaps

(2018) Larry W. Swanson   JOURNAL OF COMPARATIVE NEUROLOGY

Genomics, microbiomics, proteomics, and metabolomics in bronchopulmonary dysplasia

(2018) Charitharth Vivek Lal et al.   SEMINARS IN PERINATOLOGY

Single cell RNA analysis identifies cellular heterogeneity and adaptive responses of the lung at birth

(2018) Minzhe Guo et al.   Nature Communications

Modeling DNA damage-induced pneumopathy in mice: insight from danger signaling cascades

(2017) Florian Wirsdörfer et al.   Radiation Oncology

Lung Gene Expression Analysis (LGEA): an integrative web portal for comprehensive gene expression data analysis in lung development

(2017) Yina Du et al.   THORAX

Regulation of alveolar septation by microRNA-489

(2016) Nelida Olave et al.   AMERICAN JOURNAL OF PHYSIOLOGY-LUNG CELLULAR AND MOLECULAR PHYSIOLOGY

Looking ahead: where to next for animal models of bronchopulmonary dysplasia?

(2016) Claudio Nardiello et al.   CELL AND TISSUE RESEARCH

Combining transcription factor binding affinities with open-chromatin data for accurate gene expression prediction

(2016) Florian Schmidt et al.   NUCLEIC ACIDS RESEARCH

The Cell Ontology 2016: enhanced content, modularization, and ontology interoperability

(2016) Alexander D. Diehl et al.   Journal of Biomedical Semantics

Recent advances in the mechanisms of lung alveolarization and the pathogenesis of bronchopulmonary dysplasia

(2015) Diogo M. G. Silva et al.   AMERICAN JOURNAL OF PHYSIOLOGY-LUNG CELLULAR AND MOLECULAR PHYSIOLOGY

The pulmonary mesenchyme directs lung development

(2015) David McCulley et al.   CURRENT OPINION IN GENETICS & DEVELOPMENT

An illustrated anatomical ontology of the developing mouse lower urogenital tract

(2015) K. M. Georgas et al.   DEVELOPMENT

Defining cell types and states with single-cell genomics

(2015) Cole Trapnell   GENOME RESEARCH

Mouse anatomy ontologies: enhancements and tools for exploring and integrating biomedical data

(2015) Terry F. Hayamizu et al.   MAMMALIAN GENOME

‘LungGENS’: a web-based tool for mapping single-cell gene expression in the developing lung: Figure 1

(2015) Yina Du et al.   THORAX

Plasticity of Hopx+ type I alveolar cells to regenerate type II cells in the lung

(2015) Rajan Jain et al.   Nature Communications

SINCERA: A Pipeline for Single-Cell RNA-Seq Profiling Analysis

(2015) Minzhe Guo et al.   PLoS Computational Biology

Lung development: orchestrating the generation and regeneration of a complex organ

(2014) M. Herriges et al.   DEVELOPMENT

Tissue Crosstalk in Lung Development

(2014) Elizabeth A. Hines et al.   JOURNAL OF CELLULAR BIOCHEMISTRY

Alveolar progenitor and stem cells in lung development, renewal and cancer

(2014) Tushar J. Desai et al.   NATURE

Reconstructing lineage hierarchies of the distal lung epithelium using single-cell RNA-seq

(2014) Barbara Treutlein et al.   NATURE

The ontology of craniofacial development and malformation for translational craniofacial research

(2013) J.F. Brinkley et al.   AMERICAN JOURNAL OF MEDICAL GENETICS PART C-SEMINARS IN MEDICAL GENETICS

EMAP/EMAPA ontology of mouse developmental anatomy: 2013 update

(2013) Terry F Hayamizu et al.   Journal of Biomedical Semantics

Enhanced XAO: the ontology of Xenopus anatomy and development underpins more accurate annotation of gene expression and queries on Xenbase

(2013) Erik Segerdell et al.   Journal of Biomedical Semantics

A new ontology (structured hierarchy) of human developmental anatomy for the first 7 weeks (Carnegie stages 1-20)

(2012) Jonathan Bard   JOURNAL OF ANATOMY

A Role for Mesenchyme Dynamics in Mouse Lung Branching Morphogenesis

(2012) Pierre Blanc et al.   PLoS One

Uberon, an integrative multi-species anatomy ontology

(2012) Christopher J Mungall et al.   GENOME BIOLOGY

Logical Development of the Cell Ontology

(2011) Terrence F Meehan et al.   BMC BIOINFORMATICS

The National Center for Biomedical Ontology

(2011) Mark A Musen et al.   JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION

BioPortal: enhanced functionality via new Web services from the National Center for Biomedical Ontology to access and use ontologies in software applications

(2011) P. L. Whetzel et al.   NUCLEIC ACIDS RESEARCH

Airway basal stem cells: a perspective on their roles in epithelial homeostasis and remodeling

(2010) J. R. Rock et al.   Disease Models & Mechanisms

ToppCluster: a multiple gene list feature analyzer for comparative enrichment clustering and network-based dissection of biological systems

(2010) V. Kaimal et al.   NUCLEIC ACIDS RESEARCH

ToppGene Suite for gene list enrichment analysis and candidate gene prioritization

(2009) J. Chen et al.   NUCLEIC ACIDS RESEARCH

Developmental alveolarization of the mouse lung

(2008) Sonja I. Mund et al.   DEVELOPMENTAL DYNAMICS

The branching programme of mouse lung development

(2008) Ross J. Metzger et al.   NATURE

The non-human primate as a model for studying COPD and asthma

(2008) Charles G. Plopper et al.   PULMONARY PHARMACOLOGY & THERAPEUTICS