Fourier-Transform Infrared (FTIR) Spectroscopy for Typing of Clinical Enterobacter cloacae Complex Isolates

Enterobacter spp.: Update on Taxonomy, Clinical Aspects, and Emerging Antimicrobial Resistance

(2019) Anne Davin-Regli et al.   CLINICAL MICROBIOLOGY REVIEWS

Fourier-Transform InfraRed Spectroscopy Can Quickly Type Gram-Negative Bacilli Responsible for Hospital Outbreaks

(2019) Daniel Martak et al.   Frontiers in Microbiology

FT-IR Hyperspectral Imaging and Artificial Neural Network Analysis for Identification of Pathogenic Bacteria

(2018) Peter Lasch et al.   ANALYTICAL CHEMISTRY

Discrimination of non-typhoid Salmonella serogroups and serotypes by Fourier Transform Infrared Spectroscopy: A comprehensive analysis

(2018) Joana Campos et al.   INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY

Typing and species identification of clinical Klebsiella isolates by Fourier-transform infrared (FTIR) spectroscopy and matrix-assisted laser desorption/ionization time-of-flight (MALDI-TOF) mass spectrometry

(2018) Ariane G. Dinkelacker et al.   JOURNAL OF CLINICAL MICROBIOLOGY

An Overview of the Evolution of Infrared Spectroscopy Applied to Bacterial Typing

(2017) Cristina Quintelas et al.   Biotechnology Journal

Overview of molecular typing methods for outbreak detection and epidemiological surveillance

(2017) A J Sabat et al.   Eurosurveillance

Rapid characterisation of Klebsiella oxytoca isolates from contaminated liquid hand soap using mass spectrometry, FTIR and Raman spectroscopy

(2016) Ralf Dieckmann et al.   FARADAY DISCUSSIONS

Enterobacter bugandensis sp. nov., isolated from neonatal blood

(2016) Swapnil Doijad et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

PHASTER: a better, faster version of the PHAST phage search tool

(2016) David Arndt et al.   NUCLEIC ACIDS RESEARCH

High-resolution subtyping of Staphylococcus aureus strains by means of Fourier-transform infrared spectroscopy

(2016) Sophia Johler et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY

Rapid characterisation of Klebsiella oxytoca isolates from contaminated liquid hand soap using mass spectrometry, FTIR and Raman spectroscopy

(2016) Ralf Dieckmann et al.   FARADAY DISCUSSIONS

JSpeciesWS: a web server for prokaryotic species circumscription based on pairwise genome comparison

(2015) Michael Richter et al.   BIOINFORMATICS

Application of Whole-Genome Sequencing for Bacterial Strain Typing in Molecular Epidemiology

(2015) Stephen J. Salipante et al.   JOURNAL OF CLINICAL MICROBIOLOGY

A5-miseq: an updated pipeline to assemble microbial genomes from Illumina MiSeq data

(2014) David Coil et al.   BIOINFORMATICS

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Characterization of the core and accessory genomes of Pseudomonas aeruginosa using bioinformatic tools Spine and AGEnt

(2014) Egon A Ozer et al.   BMC GENOMICS

Development of a FTIR-ATR based model for typing clinically relevant Acinetobacter baumannii clones belonging to ST98, ST103, ST208 and ST218

(2014) Clara Sousa et al.   JOURNAL OF PHOTOCHEMISTRY AND PHOTOBIOLOGY B-BIOLOGY

Identification of microorganisms by FTIR spectroscopy: perspectives and limitations of the method

(2013) Mareike Wenning et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Rapid and Reliable Identification of Staphylococcus aureus Capsular Serotypes by Means of Artificial Neural Network-Assisted Fourier Transform Infrared Spectroscopy

(2013) T. Grunert et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Assembling Single-Cell Genomes and Mini-Metagenomes From Chimeric MDA Products

(2013) Sergey Nurk et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Multilocus Sequence Typing (MLST) for Characterization of Enterobacter cloacae

(2013) Tohru Miyoshi-Akiyama et al.   PLoS One

Diverse high-risk B2 and D Escherichia coli clones depicted by Fourier Transform Infrared Spectroscopy

(2013) Clara Sousa et al.   Scientific Reports

Enterobacter cloacaecomplex: clinical impact and emerging antibiotic resistance

(2012) Maria Lina Mezzatesta et al.   Future Microbiology

Identification of Yersinia enterocolitica at the Species and Subspecies Levels by Fourier Transform Infrared Spectroscopy

(2009) A. E. Kuhm et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Specific Distribution within the Enterobacter cloacae Complex of Strains Isolated from Infected Orthopedic Implants

(2009) P. C. Morand et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Shifting the genomic gold standard for the prokaryotic species definition

(2009) Michael Richter et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Investigation of an outbreak of Enterobacter cloacae in a neonatal unit and review of the literature

(2008) M. Dalben et al.   JOURNAL OF HOSPITAL INFECTION