Changes in the Carbon Metabolism of Escherichia coli During the Evolution of Doxycycline Resistance

Dose-dependent impact of oxytetracycline on the veal calf microbiome and resistome

(2019) Bart J. F. Keijser et al.   BMC GENOMICS

In-host evolution of Staphylococcus epidermidis in a pacemaker-associated endocarditis resulting in increased antibiotic tolerance

(2019) Vanina Dengler Haunreiter et al.   Nature Communications

Antibiotic treatment triggers gut dysbiosis and modulates metabolism in a chicken model of gastro-intestinal infection

(2019) Caroline Ivanne Le Roy et al.   BMC Veterinary Research

Glucose limitation and glucose uptake rate determines metabolite production and sporulation in high cell density continuous cultures of Bacillus amyloliquefaciens 83

(2019) Sergio Andrés Cristiano-Fajardo et al.   JOURNAL OF BIOTECHNOLOGY

Tetracyclines, sulfonamides and quinolones and their corresponding resistance genes in the Three Gorges Reservoir, China

(2018) Muting Yan et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Understanding antibiotic resistance via outer membrane permeability

(2018) Ishan Ghai et al.   Infection and Drug Resistance

Fate of microbial pollutants and evolution of antibiotic resistance in three types of soil amended with swine slurry

(2018) Qianwen Sui et al.   ENVIRONMENTAL POLLUTION

Antibiotic tolerance facilitates the evolution of resistance

(2017) Irit Levin-Reisman et al.   SCIENCE

Evolution of Acinetobacter baumannii In Vivo: International Clone II, More Resistance to Ceftazidime, Mutation in ptk

(2017) Xiaoting Hua et al.   Frontiers in Microbiology

Spatiotemporal microbial evolution on antibiotic landscapes

(2016) M. Baym et al.   SCIENCE

Comprehensive Evaluation of Antibiotics Emission and Fate in the River Basins of China: Source Analysis, Multimedia Modeling, and Linkage to Bacterial Resistance

(2015) Qian-Qian Zhang et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Fructose Restores Susceptibility of Multidrug-Resistant Edwardsiella tarda to Kanamycin

(2015) Yu-bin Su et al.   JOURNAL OF PROTEOME RESEARCH

Mechanisms of antibiotic resistance

(2015) Jun Lin et al.   Frontiers in Microbiology

Selective pressure of antibiotics on ARGs and bacterial communities in manure-polluted freshwater-sediment microcosms

(2015) Wenguang Xiong et al.   Frontiers in Microbiology

Tetracycline antibiotics and resistance mechanisms

(2014) Fabian Nguyen et al.   BIOLOGICAL CHEMISTRY

The fitness costs of antibiotic resistance mutations

(2014) Anita H. Melnyk et al.   Evolutionary Applications

Related actions of probiotics and antibiotics on gut microbiota and weight modification

(2013) Emmanouil Angelakis et al.   LANCET INFECTIOUS DISEASES

Mannitol Enhances Antibiotic Sensitivity of Persister Bacteria in Pseudomonas aeruginosa Biofilms

(2013) Nicolas Barraud et al.   PLoS One

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Metabolite-enabled eradication of bacterial persisters by aminoglycosides

(2011) Kyle R. Allison et al.   NATURE

Evolutionary paths to antibiotic resistance under dynamically sustained drug selection

(2011) Erdal Toprak et al.   NATURE GENETICS

Gene ontology analysis for RNA-seq: accounting for selection bias

(2010) Matthew D Young et al.   GENOME BIOLOGY

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

DEGseq: an R package for identifying differentially expressed genes from RNA-seq data

(2009) Likun Wang et al.   BIOINFORMATICS

TopHat: discovering splice junctions with RNA-Seq

(2009) Cole Trapnell et al.   BIOINFORMATICS

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

BreakDancer: an algorithm for high-resolution mapping of genomic structural variation

(2009) Ken Chen et al.   NATURE METHODS