DNA methylation of individual repetitive elements in hepatitis C virus infection-induced hepatocellular carcinoma

Global surveillance of trends in cancer survival 2000–14 (CONCORD-3): analysis of individual records for 37 513 025 patients diagnosed with one of 18 cancers from 322 population-based registries in 71 countries

(2018) Claudia Allemani et al.   LANCET

Hepatocellular carcinoma

(2018) Alejandro Forner et al.   LANCET

Prognostic value of LINE-1 methylation level in 321 patients with primary liver cancer including hepatocellular carcinoma and intrahepatic cholangiocarcinoma

(2018) Tatsunori Miyata et al.   Oncotarget

Integrating the Epigenome to Identify Novel Drivers of Hepatocellular Carcinoma

(2018) R A Hlady et al.   HEPATOLOGY

Incidence of Hepatocellular Carcinoma in All 50 United States, From 2000 Through 2012

(2017) Donna L. White et al.   GASTROENTEROLOGY

Intragenic DNA methylation prevents spurious transcription initiation

(2017) Francesco Neri et al.   NATURE

Prediction of genome-wide DNA methylation in repetitive elements

(2017) Yinan Zheng et al.   NUCLEIC ACIDS RESEARCH

Epigenome-wide association study in hepatocellular carcinoma: Identification of stochastic epigenetic mutations through an innovative statistical approach

(2017) Davide Gentilini et al.   Oncotarget

Hepatitis C Virus-Induced Upregulation of MicroRNA miR-146a-5p in Hepatocytes Promotes Viral Infection and Deregulates Metabolic Pathways Associated with Liver Disease Pathogenesis

(2016) Simonetta Bandiera et al.   JOURNAL OF VIROLOGY

Retrotransposons as regulators of gene expression

(2016) R. A. Elbarbary et al.   SCIENCE

Interplay of genetic and epigenetic alterations in hepatocellular carcinoma

(2016) Sun-Min Lee et al.   Epigenomics

Links between Human LINE-1 Retrotransposons and Hepatitis Virus-Related Hepatocellular Carcinoma

(2016) Tomoyuki Honda   Frontiers in Chemistry

Aberrant Expression of proPTPRN2 in Cancer Cells Confers Resistance to Apoptosis

(2015) A. V. Sorokin et al.   CANCER RESEARCH

Type I Interferon Controls Propagation of Long Interspersed Element-1

(2015) Qiujing Yu et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Integrative analysis of 111 reference human epigenomes

(2015) Anshul Kundaje et al.   NATURE

ENmix: a novel background correction method for Illumina HumanMethylation450 BeadChip

(2015) Zongli Xu et al.   NUCLEIC ACIDS RESEARCH

limma powers differential expression analyses for RNA-sequencing and microarray studies

(2015) Matthew E. Ritchie et al.   NUCLEIC ACIDS RESEARCH

Differential regulation of cytotoxicity pathway discriminating between HIV, HCV mono- and co-infection identified by transcriptome profiling of PBMCs

(2015) Jing Wu et al.   Virology Journal

Inter-locus as well as intra-locus heterogeneity in LINE-1 promoter methylation in common human cancers suggests selective demethylation pressure at specific CpGs

(2015) Nicole Nüsgen et al.   Clinical Epigenetics

Epigenetic signatures of alcohol abuse and hepatitis infection during human hepatocarcinogenesis

(2015) Ryan A. Hlady et al.   Oncotarget

Pathogenesis and prevention of hepatitis C virus-induced hepatocellular carcinoma

(2014) Yujin Hoshida et al.   JOURNAL OF HEPATOLOGY

Androgen-responsive Serum Response Factor target genes regulate prostate cancer cell migration

(2013) A. R. Verone et al.   CARCINOGENESIS

Endogenous Retrotransposition Activates Oncogenic Pathways in Hepatocellular Carcinoma

(2013) Ruchi Shukla et al.   CELL

Maintenance of DNA methylation: Dnmt3b joins the dance

(2012) Emma L. Walton et al.   Epigenetics

Exploring genome-wide DNA methylation profiles altered in hepatocellular carcinoma using Infinium HumanMethylation 450 BeadChips

(2012) Jing Shen et al.   Epigenetics

Nonstructural 5A protein of hepatitis C virus regulates heat shock protein 72 for its own propagation

(2011) Y. S. Lim et al.   JOURNAL OF VIRAL HEPATITIS

Hypomethylation of Intragenic LINE-1 Represses Transcription in Cancer Cells through AGO2

(2011) Chatchawit Aporntewan et al.   PLoS One

Novel Candidate Cancer Genes Identified by a Large-Scale Cross-Species Comparative Oncogenomics Approach

(2010) J. Mattison et al.   CANCER RESEARCH

A mobile threat to genome stability: The impact of non-LTR retrotransposons upon the human genome

(2010) Miriam K. Konkel et al.   SEMINARS IN CANCER BIOLOGY

Aberrant methylation and associated transcriptional mobilization of Alu elements contributes to genomic instability in hypoxia

(2009) Arnab Pal et al.   JOURNAL OF CELLULAR AND MOLECULAR MEDICINE

Human DNA methylomes at base resolution show widespread epigenomic differences

(2009) Ryan Lister et al.   NATURE

The impact of retrotransposons on human genome evolution

(2009) Richard Cordaux et al.   NATURE REVIEWS GENETICS

LINE dancing in the human genome: transposable elements and disease

(2009) Victoria P Belancio et al.   Genome Medicine

LINE-1 methylation patterns of different loci in normal and cancerous cells

(2008) Chureerat Phokaew et al.   NUCLEIC ACIDS RESEARCH