4.7 Article

Phosphorus starvation and luxury uptake in green microalgae revisited

Journal

Publisher

ELSEVIER
DOI: 10.1016/j.algal.2019.101651

Keywords

Chlorella; Luxury uptake; Phosphorus starvation; Lipids; Polyphosphate; Transcriptomics

Funding

  1. BioSC - Ministry of Innovation, Science, and Research of the German State of North Rhine-Westphalia
  2. RFBR [19-0400509]
  3. Russian Foundation [18-29-25050]
  4. RUDN University Program 5-100
  5. Czech Science Foundation [GACR 17-06264S]

Ask authors/readers for more resources

Phosphorus (P) is central to storing and transferring energy and information in living cells, including those of microalgae. Many microalgal species dwelling in low P environments are naturally equipped to take up and store P whenever it becomes available through a complex phenomenon known as luxury P uptake. Its research is required for better understanding of the nutrient geochemical cycles in aquatic environments but also for biotechnological applications such as sequestration of nutrients from wastewater and production of algal fertilizers. Here, we report on our recent insights into luxury P uptake and polyphosphate formation originating from physiological, ultrastructural, and transcriptomic evidence. The cultures pre-starved of P and re-fed with inorganic phosphate (P-i) exhibited a bi-phasic kinetics of P-i uptake comprising fast (1-2 h after re-feeding) and slow (1-3 d after re-feeding) phases. The rate of P-i uptake in the fast phase was ca. 10 times higher than in the slow phase with an opposite trend shown for the cell division rate. The transient peak of polyphosphate accumulation was determined 2-4 h after re-feeding and coincided with the period of slow cell division and fast P-i uptake. In this phase, the microalgal cells reached the highest P content (up to 5% of dry cell weight). The P re-feeding also reversed the characteristic changes in cell lipids induced by P starvation, namely increase in the major membrane glycolipid (DGDG/MGDG) ratio and betaine lipids. These changes were reversed upon Pi re-feeding of the starved culture. Electron microscopy revealed the ordered organization of vacuolar polyphosphate indicative of the possible involvement of an enzyme (complex) in their synthesis. A candidate gene encoding a protein similar to the vacuolar transport chaperone (VTC) protein, featuring an expression pattern corresponding to polyphosphate accumulation, was revealed. Implications of the findings for efficient biocapture of phosphorus are discussed.

Authors

I am an author on this paper
Click your name to claim this paper and add it to your profile.

Reviews

Primary Rating

4.7
Not enough ratings

Secondary Ratings

Novelty
-
Significance
-
Scientific rigor
-
Rate this paper

Recommended

Article Biotechnology & Applied Microbiology

Immobilization of a Mixed Culture of Oxygenic Phototrophic Microorganisms on a Chitosan-Based Sorbent for Nutrient Bioremoval

S. G. Vasilieva, L. R. Semenova, I. O. Selyakh, O. B. Chivkunova, P. N. Shcherbakov, O. I. Baulina, O. A. Gorelova, E. S. Lobakova

Summary: This study investigated the immobilization of a mixed culture of microalgae and cyanobacteria on a chitosan-based polymer. The results showed that the chitosan sorbent had a high sorption capacity and provided stable cellular attachment for the immobilized culture. The immobilization on the chitosan sorbent increased the bioremoval of nitrates and phosphates by the mixed culture.

APPLIED BIOCHEMISTRY AND MICROBIOLOGY (2022)

Article Environmental Sciences

The effects of microalgae-based fertilization of wheat on yield, soil microbiome and nitrogen oxides emissions

Ram Chandra Shrestha, Lusine Ghazaryan, Ben Poodiack, Boris Zorin, Avner Gross, Osnat Gillor, Inna Khozin-Goldberg, Ilya Gelfand

Summary: The study found that fertilization with algal biomass reduced wheat grain nitrogen content and soil nitrogen oxide emissions, leading to lower greenhouse gas emissions and global warming impact compared to urea fertilization.

SCIENCE OF THE TOTAL ENVIRONMENT (2022)

Article Plant Sciences

Multiplexed Genome Editing via an RNA Polymerase II Promoter-Driven sgRNA Array in the Diatom Phaeodactylum tricornutum: Insights Into the Role of StLDP

Yogesh Taparia, Achintya Kumar Dolui, Sammy Boussiba, Inna Khozin-Goldberg

Summary: This study describes the construction of a modular two-component transcriptional unit system to express SpCas9 in a diatom. The system enables multiplexed targeting and marker-free genome editing. The editing efficiency of the system was evaluated by targeting the StLDP gene, and the results showed the importance of StLDP in lipid droplet regulation.

FRONTIERS IN PLANT SCIENCE (2022)

Letter Biochemical Research Methods

VDJdb in the pandemic era: a compendium of T cell receptors specific for SARS-CoV-2

Mikhail Goncharov, Dmitry Bagaev, Dmitrii Shcherbinin, Ivan Zvyagin, Dmitry Bolotin, Paul G. Thomas, Anastasia A. Minervina, Mikhail V. Pogorelyy, Kristin Ladell, James E. McLaren, David A. Price, Thi H. O. Nguyen, Louise C. Rowntree, E. Bridie Clemens, Katherine Kedzierska, Garry Dolton, Cristina Rafael Rius, Andrew Sewell, Jerome Samir, Fabio Luciani, Ksenia V. Zornikova, Alexandra A. Khmelevskaya, Saveliy A. Sheetikov, Grigory A. Efimov, Dmitry Chudakov, Mikhail Shugay

NATURE METHODS (2022)

Article Biotechnology & Applied Microbiology

Fixing N2 into cyanophycin: continuous cultivation of Nostoc sp. PCC 7120

Giulia Trentin, Francesca Piazza, Marta Carletti, Boris Zorin, Inna Khozin-Goldberg, Alberto Bertucco, Eleonora Sforza

Summary: Two diazotrophic cyanobacteria were cultivated to produce cyanophycin under nitrogen fixing conditions. Nostoc sp. showed higher efficiency in accumulating cyanophycin and fixing atmospheric nitrogen. The operating conditions were optimized, with nitrogen availability and/or pH playing a major role in biomass production and phosphorus limitation maximizing cyanophycin accumulation.

APPLIED MICROBIOLOGY AND BIOTECHNOLOGY (2023)

Article Food Science & Technology

Dietary Application of the Microalga Lobosphaera incisa P127 Reduces Severity of Intestinal Inflammation, Modulates Gut-Associated Gene Expression, and Microbiome in the Zebrafish Model of IBD

Ekaterina Novichkova, Sagar Nayak, Sammy Boussiba, Jacob Gopas, Dina Zilberg, Inna Khozin-Goldberg

Summary: The study investigates the anti-inflammatory and immunomodulatory potential of the microalga Lobosphaera incisa P127 in the zebrafish model of IBD. Results show that diets containing 15% non-starved (Ns) and 7.5% and 15% nitrogen-starved (St) algal biomass effectively attenuate gut injury, while diets containing 7.5% Ns and DGLA ethyl ester have no effect on gut condition.

MOLECULAR NUTRITION & FOOD RESEARCH (2023)

Article Biology

The use of non-functional clonotypes as a natural calibrator for quantitative bias correction in adaptive immune receptor repertoire profiling

Anastasia O. Smirnova, Anna M. Miroshnichenkova, Yulia Olshanskaya, Michael A. Maschan, Yuri B. Lebedev, Dmitriy M. Chudakov, Ilgar Z. Mamedov, Alexander Komkov

Summary: High-throughput sequencing of adaptive immune receptor repertoires is valuable for studying adaptive immunity, but accurately detecting and correcting clone frequency discrepancies remains challenging. This study identified an anomaly in the ratio between read count and clone count-based frequencies of non-functional clonotypes in multiplex PCR-based immune repertoires. They developed a quantitative measure called Over Amplification Rate (OAR) to evaluate and correct V and J gene frequency bias caused by multiplex PCR. The iROAR software was successfully tested and shown to increase the accuracy and consistency of repertoire reconstruction for comparative analysis.

ELIFE (2023)

Article Chemistry, Multidisciplinary

Application of the Impedance Measurement Method to Evaluate the Results of Winter Grafting of Pear Cuttings Using Cold Plasma

Rostislav A. Filippov, Alexei Solovchenko, Dmitry Khort, Igor G. Smirnov, Alexey I. Kutyrev, Roman V. Pobedonostsev, Denis V. Yanykin

Summary: Electroimpedance spectroscopy technology can accelerate the healing of trees and assess plant condition after grafting. This study introduces a compact device that overcomes limitations of equipment complexity and measurement conditions. Cold atmospheric plasma (CAP) and plasma-treated solution (PTS) were used to treat pear grafts, promoting graft fusion and improving healing process. Impedance values showed better healing in plants treated with CAP and PTS compared to the control, indicating higher quality planting material can be obtained earlier than conventional methods.

APPLIED SCIENCES-BASEL (2023)

Article Biology

Effect of Abscisic Acid on Growth, Fatty Acid Profile, and Pigment Composition of the Chlorophyte Chlorella (Chromochloris) zofingiensis and Its Co-Culture Microbiome

Tatiana A. Kozlova, Alexander V. Kartashov, Elena Zadneprovskaya, Anastasia Krapivina, Peter Zaytsev, Olga B. Chivkunova, Alexei E. Solovchenko

Summary: This study evaluated the influence of the phytohormone ABA on the physiology of Chlorella zofingiensis. The results showed that exogenous ABA stimulated cell division, biomass production, and biosynthesis of chlorophyll, carotenoids, and lipids. ABA also induced changes in the microbiome composition, increasing the abundance of Rhodococcus genus. The study discusses the potential applications of exogenous ABA for enhancing biomass, carotenoid, and fatty acid productivity in C. zofingiensis cultures.

LIFE-BASEL (2023)

Article Chemistry, Multidisciplinary

Assessment of the Tolerance of a Chlorophyte Desmodesmus to CuO-NP for Evaluation of the Nanopollution Bioremediation Potential of This Microalga

Svetlana P. Chebotaryova, Olga Zakharova, Alexander A. Gusev, Petr A. Baranchikov, Evgenii A. Kolesnikov, Anastasia S. Yakusheva, Elena Skripnikova, Elena S. Lobakova, Jingliang Xu, Md Asraful Alam, Alexei E. Solovchenko

Summary: The widespread use of CuO nanoparticles (CuO-NP) for various purposes poses increasing environmental hazards to aquatic ecosystems. This study investigated the accumulation ability of the microalga Desmodesmus sp. for CuO-NP and their components, as well as its tolerance to environmentally relevant concentrations of CuO-NP. The results showed that Desmodesmus sp. is relatively tolerant to CuO-NP and has the potential for bioremoval of copper-based nanostructured hazardous micropollutants (HMP) from aquatic environments.

NANOMATERIALS (2023)

Article Biochemistry & Molecular Biology

Targeted depletion of TRBV9+ T cells as immunotherapy in a patient with ankylosing spondylitis

Olga V. Britanova, Kseniia R. Lupyr, Dmitry B. Staroverov, Irina A. Shagina, Alexey A. Aleksandrov, Yakov Y. Ustyugov, Dmitry V. Somov, Alesia Klimenko, Nadejda A. Shostak, Ivan V. Zvyagin, Alexey V. Stepanov, Ekaterina M. Merzlyak, Alexey N. Davydov, Mark Izraelson, Evgeniy S. Egorov, Ekaterina A. Bogdanova, Anna K. Vladimirova, Pavel A. Iakovlev, Denis A. Fedorenko, Roman A. Ivanov, Veronika I. Skvortsova, Sergey Lukyanov, Dmitry M. Chudakov

Summary: This article introduces a therapy for treating autoimmune diseases by selectively depleting specific T cell populations. The research was conducted in patients with ankylosing spondylitis and achieved successful outcomes.

NATURE MEDICINE (2023)

Editorial Material Plant Sciences

Editorial: Metabolic engineering of valuable compounds in photosynthetic organisms

Zhi-Yan Du, Wajid Waheed Bhat, Guoyin Kai, Inna Khozin-Goldberg, Xiao-Hong Yu, Agnieszka Zienkiewicz, Krzysztof Zienkiewicz

FRONTIERS IN PLANT SCIENCE (2023)

Article Horticulture

Foliar Mn and Zn Treatments Improve Apple Tree Nutrition and Help to Maintain Favorable Soil pH

Andrei I. Kuzin, Natalia Ya. Kashirskaya, Alexei E. Solovchenko, Alexei V. Kushner, Anna M. Kochkina, Ludmila V. Stepantzova, Vyacheslav N. Krasin

Summary: The foliar application of micronutrients can improve nutrient uptake, reduce fertilizer usage, and maintain soil health. In an apple orchard experiment, manganese treatments increased foliar nitrogen content and zinc treatments enhanced foliar potassium. Low-rate chemical fertilizers application with initial high-rate organic fertilization allowed for optimal soil pH in the orchard.

HORTICULTURAE (2023)

Article Nanoscience & Nanotechnology

Assessment of the Effect of Fertilizers on the Microbiome of Apple Trees Using DNA Metabarcoding

P. A. Zaytsev, A. Kuzin, B. M. Shurygin, E. V. Skripnikova, S. A. Karpukhina, A. A. Zaytseva, A. E. Solovchenko

Summary: The biodiversity and stability of soil microbiome are crucial for preserving soil fertility in agroecosystems. Bio-based formulations that enhance soil biota activity and increase the bioavailability of mineral nutrients are becoming more widespread. DNA metabarcoding is an effective approach to assess the impact of agricultural practices on soil microbiome structure.

NANOBIOTECHNOLOGY REPORTS (2023)

Article Biochemistry & Molecular Biology

Photosynthetic and ultrastructural responses of the chlorophyte Lobosphaera to the stress caused by a high exogenic phosphate concentration

Svetlana Vasilieva, Elena Lobakova, Olga Gorelova, Olga Baulina, Pavel Scherbakov, Olga Chivkunova, Larisa Semenova, Irina Selyakh, Alexandr Lukyanov, Alexei Solovchenko

Summary: The green microalga Lobosphaera has been found to exhibit high tolerance to elevated phosphate concentrations by converting it into polyphosphate. The cell structure also undergoes adjustments in response to phosphate levels.

PHOTOCHEMICAL & PHOTOBIOLOGICAL SCIENCES (2022)

Article Biotechnology & Applied Microbiology

Extraction and characterization of bioactive compounds from brown seaweed (Undaria pinnatiida) sporophyll using two sequential green extraction techniques

Sung-Yeoul Kim, Vikash Chandra Roy, Jin-Seok Park, Byung-Soo Chun

Summary: This study aims to extract functional substances from Undaria pinnatiida sporophyll using supercritical carbon dioxide (SC-CO2) and subcritical water extraction (SWE). The results showed that the consecutive green extraction method can yield extracts rich in fucoxanthin and beta-carotene, and the sporophyll of Undaria pinnatiida contains health-beneficial fatty acids. Additionally, SWE can extract substances with antioxidant, antibacterial, and antihypertensive activities.

ALGAL RESEARCH-BIOMASS BIOFUELS AND BIOPRODUCTS (2024)