Selecting Closely-Linked SNPs Based on Local Epistatic Effects for Haplotype Construction Improves Power of Association Mapping

Haplotype-Based Genome-Wide Prediction Models Exploit Local Epistatic Interactions Among Markers

(2018) Yong Jiang et al.   G3-Genes Genomes Genetics

Araport11: a complete reannotation of theArabidopsis thalianareference genome

(2017) Chia-Yi Cheng et al.   PLANT JOURNAL

1,135 Genomes Reveal the Global Pattern of Polymorphism in Arabidopsis thaliana

(2016) Carlos Alonso-Blanco et al.   CELL

DELAY OF GERMINATION1(DOG1) regulates both seed dormancy and flowering time through microRNA pathways

(2016) Heqiang Huo et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Regularization Paths for Generalized Linear Models via Coordinate Descent

(2015) Jerome Friedman et al.   Journal of Statistical Software

MultipleFLChaplotypes defined by independentcis-regulatory variation underpin life history diversity inArabidopsis thaliana

(2014) Peijin Li et al.   GENES & DEVELOPMENT

Epistasis and quantitative traits: using model organisms to study gene–gene interactions

(2013) Trudy F. C. Mackay   NATURE REVIEWS GENETICS

Multi-locus stepwise regression: a haplotype-based algorithm for finding genetic associations applied to atopic dermatitis

(2012) Sven Knüppel et al.   BMC Medical Genetics

Fast and accurate genotype imputation in genome-wide association studies through pre-phasing

(2012) Bryan Howie et al.   NATURE GENETICS

CRYPTIC PRECOCIOUS/MED12 is a Novel Flowering Regulator with Multiple Target Steps in Arabidopsis

(2012) Yuri Imura et al.   PLANT AND CELL PHYSIOLOGY

FaST linear mixed models for genome-wide association studies

(2011) Christoph Lippert et al.   NATURE METHODS

A linear complexity phasing method for thousands of genomes

(2011) Olivier Delaneau et al.   NATURE METHODS

Haplotype phasing: existing methods and new developments

(2011) Sharon R. Browning et al.   NATURE REVIEWS GENETICS

Genome-wide association studies in plants: the missing heritability is in the field

(2011) Benjamin Brachi et al.   GENOME BIOLOGY

A validated genome-wide association study in 2 dairy cattle breeds for milk production and fertility traits using variable length haplotypes

(2010) J.E. Pryce et al.   JOURNAL OF DAIRY SCIENCE

Performance of Single Nucleotide Polymorphisms versus Haplotypes for Genome-Wide Association Analysis in Barley

(2010) Aaron J. Lorenz et al.   PLoS One

SHARE: an adaptive algorithm to select the most informative set of SNPs for candidate genetic association

(2009) J. Y. Dai et al.   BIOSTATISTICS

Genome-wide haplotype association study identifies the SLC22A3-LPAL2-LPA gene cluster as a risk locus for coronary artery disease

(2009) David-Alexandre Trégouët et al.   NATURE GENETICS

Mapping genes for complex traits in domestic animals and their use in breeding programmes

(2009) Michael E. Goddard et al.   NATURE REVIEWS GENETICS

A Flexible and Accurate Genotype Imputation Method for the Next Generation of Genome-Wide Association Studies

(2009) Bryan N. Howie et al.   PLoS Genetics

hapConstructor: automatic construction and testing of haplotypes in a Monte Carlo framework

(2008) R. Abo et al.   BIOINFORMATICS

A systematic search for SNPs/haplotypes associated with disease phenotypes using a haplotype-based stepwise procedure

(2008) Yin Yang et al.   BMC GENETICS

Genome-wide association studies for complex traits: consensus, uncertainty and challenges

(2008) Mark I. McCarthy et al.   NATURE REVIEWS GENETICS