Article
Physiology
Bradley M. Palmer, Stephen P. Bell
Summary: The reductionist approach has been valuable in understanding muscle function at the molecular level, but intact excitable muscle preparations still play a crucial role as experimental model systems. This article presents methods for preparing cardiac papillary muscle and cardiac slices, which serve as macroscopic experimental models with fully intact intercellular and intracellular structures. These model systems have proven to be especially useful for testing the functional effects of protein mutations and pharmaceutical candidates. The article provides solutions recipes for dissection and recording, as well as instructions for removing and preparing the cardiac papillary muscles and cardiac slices. These instructions are suitable for novice experimentalists and can also serve as a refresher for experienced muscle physiologists.
FRONTIERS IN PHYSIOLOGY
(2022)
Article
Polymer Science
Nanpu Cao, Wanhao Cai, Lu Qian, Zhou Nie, Chengde Mao, Shuxun Cui
Summary: Titin, a giant protein, plays a vital role in muscle's superior mechanical performance. The unfolding and refolding of its tandem domains are crucial for its modular spring function. This study proposes the use of modular DNA with multiple hairpins (MH-DNA) as a fundamental block for designing advanced materials. The analysis using atomic force microscopy (AFM)-based single-molecule force spectroscopy (SMFS) shows that MH-DNA exhibits similar stability to polyproteins like titin, making it an ideal molecular spring with exceptional mechanical efficiency.
Review
Nanoscience & Nanotechnology
Amy E. M. Beedle, Sergi Garcia-Manyes
Summary: This review discusses single-molecule force spectroscopy experiments conducted on proteins involved in mechanosensing and mechanotransduction in eukaryotic cells. Mechanical forces are emerging as a major regulator of human physiology. Single-molecule nanomechanical techniques have allowed us to gain comprehensive knowledge of the physicochemical principles governing the elasticity of single proteins and its role in mechanosensing and mechanotransduction.
NATURE REVIEWS MATERIALS
(2023)
Article
Biophysics
Sarah R. Clippinger Schulte, Brent Scott, Samantha K. Barrick, W. Tom Stump, Thomas Blackwell, Michael J. Greenberg
Summary: The cardiac cycle is tightly regulated and disruption of this process can lead to various diseases. Cardiac contraction is driven by myosin, but it is unclear how thin-filament regulatory proteins affect the mechanics of the cardiac myosin motor. This study found that thin-filament regulatory proteins gate the calcium-dependent interactions between myosin and the thin filament, but do not affect the mechanics or load-dependent kinetics of cardiac myosin at physiologically relevant ATP concentrations.
BIOPHYSICAL JOURNAL
(2023)
Article
Biophysics
Anja M. Touma, Wanjian Tang, David Rasicci, Duha Vang, Ashim Rai, Samantha B. Previs, David M. Warshaw, Christopher M. Yengo, Sivaraj Sivaramakrishnan
Summary: The nanosurfer assay provides a platform for precise manipulation of spatially dependent cMyBP-C binding-partner interactions, shedding light on the molecular regulation of beta-cardiac myosin contractility.
BIOPHYSICAL JOURNAL
(2022)
Article
Nanoscience & Nanotechnology
Serena Pilato, Samanta Moffa, Gabriella Siani, Francesca Diomede, Oriana Trubiani, Jacopo Pizzicannella, Daniele Capista, Maurizio Passacantando, Paolo Samori, Antonella Fontana
Summary: The development of novel three-dimensional (3D) nanomaterials with high biocompatibility, precise mechanical characteristics, electrical conductivity, and controlled pore size is highly sought after for cardiac tissue engineering applications. Hybrid, highly porous tridimensional scaffolds based on chemically functionalized graphene oxide (GO) can provide these unique characteristics and be manufactured using the layer-by-layer technique.
ACS APPLIED MATERIALS & INTERFACES
(2023)
Article
Nanoscience & Nanotechnology
Serena Pilato, Samanta Moffa, Gabriella Siani, Francesca Diomede, Oriana Trubiani, Jacopo Pizzicannella, Daniele Capista, Maurizio Passacantando, Paolo Samori, Antonella Fontana
Summary: The development of 3D nanomaterials with high biocompatibility, precise mechanical characteristics, electrical conductivity, and controlled pore size is crucial for cardiac tissue engineering applications. Hybrid, highly porous tridimensional scaffolds based on chemically functionalized graphene oxide (GO) offer enhanced compositional and structural control. These scaffolds are biocompatible, promote cell adhesion and growth without interfering with cell morphology and cardiac markers, and can be used for repairing damaged heart tissues and cardiac modeling investigations.
ACS APPLIED MATERIALS & INTERFACES
(2023)
Article
Multidisciplinary Sciences
Osha Roopnarine, Samantha L. Yuen, Andrew R. Thompson, Lauren N. Roelike, Robyn T. Rebbeck, Philip A. Bidwell, Courtney C. Aldrich, Razvan L. Cornea, David D. Thomas
Summary: In this study, FRET-based biosensors were used in live cells to screen small-molecules that can alter the structure and activity of SERCA2a, with the aim of discovering drug-like small-molecule activators for heart failure treatment. 50,000 compounds were screened, and 18 hit compounds were identified as SERCA modulators, with half being activators and half being inhibitors. Five promising SERCA activators were identified, one of which showed improved Ca2+-transport activity compared to Ca2+-ATPase activity. These findings provide a foundation for future testing and lead development for heart failure therapy.
SCIENTIFIC REPORTS
(2023)
Article
Multidisciplinary Sciences
Thomas Kampourakis, Malcolm Irving
Summary: The authors propose that sequential folding of myosin motors onto the filament backbone may be responsible for shortening-induced de-activation in the heart, which is essential for the efficient function of the heart. The Frank-Starling relation, where increased venous filling triggers a stronger contraction in the next beat, also plays a crucial role in the normal function of heart muscle.
NATURE COMMUNICATIONS
(2021)
Article
Cell & Tissue Engineering
Taro Nakazato, Takuji Kawamura, Toshimasa Uemura, Li Liu, Junjun Li, Masao Sasai, Akima Harada, Emiko Ito, Hiroko Iseoka, Koichi Toda, Yoshiki Sawa, Shigeru Miyagawa
Summary: Dynamic culture of human-induced pluripotent stem cell-derived cardiomyocytes in a rotating wall vessel bioreactor significantly improves cellular function and muscle contraction and electrical properties of cardiac tissues, promoting the recovery of cardiac performance.
Article
Cardiac & Cardiovascular Systems
Rohit R. Singh, Rebecca E. Slater, Jinghong Wang, Chen Wang, Qi Guo, Alykhan S. Motani, James J. Hartman, Sakthivel Sadayappan, Brandon L. Ason
Summary: This study compared the effects of two small molecules that alter the activity of sarcomere proteins on cardiac muscle mechanics. The results showed differences in the mechanism of contractile force generation, suggesting that targeting different proteins within the sarcomere may lead to different therapeutic outcomes.
JACC-BASIC TO TRANSLATIONAL SCIENCE
(2022)
Article
Materials Science, Multidisciplinary
D. H. Choi, T. Pham, D. S. Loiselle, A. J. Taberner, J. -C. Han, K. Tran
Summary: The study found that the inverse relationship between muscle stress and cross-sectional area was preserved in both contracture modes, indicating that contractile activation and mitochondrial respiration do not significantly contribute to the discrepancy between predicted and observed critical muscle sizes. Despite higher levels of muscle activation in both modes, there was only a small increase in the critical muscle size at which stress begins to decline.
EXPERIMENTAL MECHANICS
(2021)
Review
Biochemistry & Molecular Biology
Samantha K. Barrick, Michael J. Greenberg
Summary: Cardiac myosin, as a molecular motor, plays an important role in driving heart contraction and is involved in regulating the process. Studies have shown that tension generated by cardiac myosin affects physiological processes beyond muscle contraction. Furthermore, research on cardiac myosin as a target for heart disease treatment is ongoing.
JOURNAL OF BIOLOGICAL CHEMISTRY
(2021)
Article
Physiology
Srboljub M. Mijailovich, Momcilo Prodanovic, Corrado Poggesi, Michael A. Geeves, Michael Regnier
Summary: Understanding the dynamics of a cardiac muscle twitch contraction is complex, involving detailed processes such as the Ca2+ transient, thin-filament activation, and the myosin-actin cross-bridge chemomechanical cycle. Computational modeling can provide insights into how these processes affect contractile behavior and how mutations may impact these processes. Validation of computational models depends on experimental data, but there is a lack of comprehensive datasets to simulate various parameters simultaneously.
JOURNAL OF GENERAL PHYSIOLOGY
(2021)
Article
Biophysics
Wanjian Tang, Jinghua Ge, William C. Unrath, Rohini Desetty, Christopher M. Yengo
Summary: By utilizing a fluorescence resonance energy transfer strategy, structural changes in the lever arm domain of human beta-cardiac myosin subfragment 1 were investigated, revealing characteristics of the power stroke in M2 beta-S1 and mutation-associated defects. These studies help uncover structure-based mechanisms of contractile dysfunction.
BIOPHYSICAL JOURNAL
(2021)
Article
Cell Biology
Frank Li, Justin Kolb, Julie Crudele, Zaynab Hourani, John E. Smith, Jeffrey S. Chamberlain, Henk Granzier
Article
Multidisciplinary Sciences
Johan Lindqvist, Weikang Ma, Frank Li, Yaeren Hernandez, Justin Kolb, Balazs Kiss, Paola Tonino, Robbert van der Pijl, Esmat Karimi, Henry Gong, Josh Strom, Zaynab Hourani, John E. Smith, Coen Ottenheijm, Thomas Irving, Henk Granzier
NATURE COMMUNICATIONS
(2020)
Article
Physiology
Robbert J. van der Pijl, Brian Hudson, Tomotaroh Granzier-Nakajima, Frank Li, Anne M. Knottnerus, John Smith, Charles S. Chung, Michael Gotthardt, Henk L. Granzier, Coen A. C. Ottenheijm
FRONTIERS IN PHYSIOLOGY
(2020)
Article
Engineering, Environmental
John Smith, Lucas Holden
Summary: Field observations of columnar-jointed basalt lava flows at Organ Pipes National Park near Melbourne, Australia, show varying columnar cooling joint orientations. Terrestrial laser scanning data provides a more comprehensive dataset for joint face orientations compared to manually collected data, but careful interpretation is required to recognize the variation in column orientation and the associated slope stability mechanisms.
BULLETIN OF ENGINEERING GEOLOGY AND THE ENVIRONMENT
(2021)
Article
Physiology
Jochen Gohlke, Paola Tonino, Johan Lindqvist, John E. Smith, Henk Granzier
Summary: Nebulin protein is consistently present in various animal species with similar domain composition, and its quantity varies with body size, affecting muscle length, force production, energy efficiency, and shortening velocity. The inclusion of differentially spliced simple repeats in nebulin's C terminus correlates with Z-disk width, potentially increasing nebulin interactions with Z-disk proteins in large animals under prolonged stress.
JOURNAL OF GENERAL PHYSIOLOGY
(2021)
Article
Engineering, Civil
Yujia Wang, John V. Smith, Majidreza Nazem
Summary: Slope instability is a common geotechnical issue in South Gippsland, Victoria, Australia, where an integrated slope-stabilisation system combining two well-developed methods has been widely used by the local authorities. Through parametric studies, the infrastructure has been optimized to ensure stability without compromising safety margins.
KSCE JOURNAL OF CIVIL ENGINEERING
(2021)
Article
Engineering, Geological
Yibing Ning, Huiming Tang, Guangcheng Zhang, John Smith, Bocheng Zhang, Peiwu Shen, Hongjie Chen
Summary: The investigation reveals the instability mechanism of the rockslide in the upper Lancang River after reservoir impoundment. The toppling instability accelerated with river downcutting, while the slope deformation mode changed from slow toppling to rapid sliding after impoundment.
ENGINEERING GEOLOGY
(2021)
Article
Engineering, Civil
Marthinus C. H. Sonnekus, John V. Smith
Summary: Obtaining representative samples for laboratory shear strength testing is crucial for a successful geotechnical investigation. This study discusses the selection of appropriate testing methods and their limitations in mining mineral sands deposits. Recovering undisturbed samples improves confidence and reliability in probabilistic stability analysis. A comparison of consolidated undrained triaxial and direct shear tests shows that the latter yields lower results and has higher variation. Incorporating triaxial test data in pit slope stability assessment leads to a significantly higher confidence level compared to using direct shear test data.
KSCE JOURNAL OF CIVIL ENGINEERING
(2022)
Article
Cardiac & Cardiovascular Systems
Mei Methawasin, Gerrie P. Farman, Shawtaroh Granzier-Nakajima, Joshua Strom, Balazs Kiss, John E. Smith, Henk Granzier
Summary: This study reveals the importance of titin's C-zone in regulating cardiac function, as it affects the contraction and relaxation of cardiomyocytes by regulating the length of the thick filament.
JOURNAL OF MOLECULAR AND CELLULAR CARDIOLOGY
(2022)
Article
Engineering, Civil
Yujia Wang, John Smith, Majidreza Nazem
Summary: This paper analyzes a distinctive slope stabilisation method and investigates its impact on slope stability under rainfall using numerical simulation. The results show that this method significantly improves slope stability, limits displacement increment, and identifies the most critical rainfall pattern.
INTERNATIONAL JOURNAL OF CIVIL ENGINEERING
(2023)
Article
Engineering, Geological
Yujia Wang, Majidreza Nazem, John V. Smith
Summary: Severe slope instability in South Gippsland, Victoria state, Australia has been effectively addressed using an integrated slope-stabilisation method. This method includes the installation of a pile-retaining structure at the toe of a gabion-faced geogrid-reinforced retaining wall, with lateral support provided by a continuous steel rail wall embedded in concrete piles. Parametric studies reveal that additional contribution from piles can significantly increase slope stability.
INTERNATIONAL JOURNAL OF GEOSYNTHETICS AND GROUND ENGINEERING
(2022)
Article
Developmental Biology
Ananya R. Guntur, John E. Smith, Archana Brahmandam, Phillip Debauche, Claire Cronmiller, Martha J. Lundell
Summary: This study provides the first evidence of the role of transcription factor ZFH-2 in Drosophila oogenesis. Loss of ZFH-2 function impacts the ovary phenotype and may be genetically related to the daughterless gene. Additionally, ZFH-2 is localized at specific sites on polytene chromosomes and colocalizes with the insulator/promoter cofactor CP190.
DEVELOPMENTAL BIOLOGY
(2023)
Review
Engineering, Civil
Yuecheng Xin, Abbas Mohajerani, Halenur Kurmus, John Smith
Summary: Incorporating recycled waste glass in fired clay bricks can improve material strength, density, and thermal conductivity, making it a practical solution for waste management and sustainable construction materials.
INTERNATIONAL JOURNAL OF GEOMATE
(2021)
Article
Engineering, Civil
Qibin Yuan, Abbas Mohajerani, Halenur Kurmus, John Smith
Summary: The generation of waste is increasing globally, leading to a demand for effective recycling options in ceramic tile production. Utilizing waste materials in tiles enhances their physical properties and reduces pollution, although further research and development are necessary.
INTERNATIONAL JOURNAL OF GEOMATE
(2021)
Article
Multidisciplinary Sciences
Balazs Kiss, Jochen Gohlke, Paola Tonino, Zaynab Hourani, Justin Kolb, Joshua Strom, Olga Alekhina, John E. Smith, Coen Ottenheijm, Carol Gregorio, Henk Granzier