A chromosome-level genome assembly of Cydia pomonella provides insights into chemical ecology and insecticide resistance

The Rosa genome provides new insights into the domestication of modern roses

(2018) Olivier Raymond et al.   NATURE GENETICS

The genome of the Hi5 germ cell line from Trichoplusia ni, an agricultural pest and novel model for small RNA biology

(2018) Yu Fu et al.   eLife

A high-quality chromosome-level genome assembly of a generalist herbivore, Trichoplusia ni

(2018) Wenbo Chen et al.   Molecular Ecology Resources

CYP6AE gene cluster knockout in Helicoverpa armigera reveals role in detoxification of phytochemicals and insecticides

(2018) Huidong Wang et al.   Nature Communications

Design of larval chemical attractants based on odorant response spectra of odorant receptors in the cotton bollworm

(2017) Chang Di et al.   INSECT BIOCHEMISTRY AND MOLECULAR BIOLOGY

Characterization of Odorant Receptors from a Non-ditrysian Moth, Eriocrania semipurpurella Sheds Light on the Origin of Sex Pheromone Receptors in Lepidoptera

(2017) Jothi Kumar Yuvaraj et al.   MOLECULAR BIOLOGY AND EVOLUTION

Genomic adaptation to polyphagy and insecticides in a major East Asian noctuid pest

(2017) Tingcai Cheng et al.   Nature Ecology & Evolution

Phased diploid genome assembly with single-molecule real-time sequencing

(2016) Chen-Shan Chin et al.   NATURE METHODS

Redundans: an assembly pipeline for highly heterozygous genomes

(2016) Leszek P. Pryszcz et al.   NUCLEIC ACIDS RESEARCH

Identification and testing of oviposition attractant chemical compounds for Musca domestica

(2016) Rui Tang et al.   Scientific Reports

BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs

(2015) Felipe A. Simão et al.   BIOINFORMATICS

Identifying genomic changes associated with insecticide resistance in the dengue mosquitoAedes aegyptiby deep targeted sequencing

(2015) Frederic Faucon et al.   GENOME RESEARCH

Genome sequence of the Asian Tiger mosquito,Aedes albopictus, reveals insights into its biology, genetics, and evolution

(2015) Xiao-Guang Chen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Drosophila Chemoreceptors: A Molecular Interface Between the Chemical World and the Brain

(2015) Ryan M. Joseph et al.   TRENDS IN GENETICS

Specific olfactory neurons and glomeruli are associated to differences in behavioral responses to pheromone components between two Helicoverpa species

(2015) Han Wu et al.   Frontiers in Behavioral Neuroscience

Prediction of piRNAs using transposon interaction and a support vector machine

(2014) Kai Wang et al.   BMC BIOINFORMATICS

OMIGA: Optimized Maker-Based Insect Genome Annotation

(2014) Jinding Liu et al.   MOLECULAR GENETICS AND GENOMICS

Integration of mapped RNA-Seq reads into automatic training of eukaryotic gene finding algorithm

(2014) Alexandre Lomsadze et al.   NUCLEIC ACIDS RESEARCH

Pilon: An Integrated Tool for Comprehensive Microbial Variant Detection and Genome Assembly Improvement

(2014) Bruce J. Walker et al.   PLoS One

The Glanville fritillary genome retains an ancient karyotype and reveals selective chromosomal fusions in Lepidoptera

(2014) Virpi Ahola et al.   Nature Communications

Genome-wide analysis reveals the expansion of Cytochrome P450 genes associated with xenobiotic metabolism in rice striped stem borer, Chilo suppressalis

(2013) Baoju Wang et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Evaluation of Cytochrome P450 Activity in Field Populations of Cydia pomonella (Lepidoptera: Tortricidae) Resistant to Azinphosmethyl, Acetamiprid, and Thiacloprid

(2013) L. B. Cichón et al.   JOURNAL OF ECONOMIC ENTOMOLOGY

A heterozygous moth genome provides insights into herbivory and detoxification

(2013) Minsheng You et al.   NATURE GENETICS

Chromosomal Evolution in Tortricid Moths: Conserved Karyotypes with Diverged Features

(2013) Jindra Šíchová et al.   PLoS One

Neo-sex chromosomes and adaptive potential in tortricid pests

(2013) P. Nguyen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Electroantennogram responses of an invasive species fall webworm (Hyphantria cunea) to host volatile compounds

(2012) Rui Tang et al.   CHINESE SCIENCE BULLETIN

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

(2012) Cole Trapnell et al.   Nature Protocols

Putative Chemosensory Receptors of the Codling Moth, Cydia pomonella, Identified by Antennal Transcriptome Analysis

(2012) Jonas M. Bengtsson et al.   PLoS One

The Molecular and Cellular Basis of Bitter Taste in Drosophila

(2011) Linnea A. Weiss et al.   NEURON

miRDeep2 accurately identifies known and hundreds of novel microRNA genes in seven animal clades

(2011) Marc R. Friedländer et al.   NUCLEIC ACIDS RESEARCH

The genome of the fire ant Solenopsis invicta

(2011) Y. Wurm et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genome-wide synteny through highly sensitive sequence alignment: Satsuma

(2010) M. G. Grabherr et al.   BIOINFORMATICS

MapMi: automated mapping of microRNA loci

(2010) Jose Afonso Guerra-Assuncao et al.   BMC BIOINFORMATICS

Molecular basis of odor coding in the malaria vector mosquito Anopheles gambiae

(2010) G. Wang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Infernal 1.0: inference of RNA alignments

(2009) E. P. Nawrocki et al.   BIOINFORMATICS

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Improvement of the sterile insect technique for codling mothCydia pomonella(Linnaeus) (Lepidoptera Tortricidae) to facilitate expansion of field application

(2009) M. J. B. Vreysen et al.   JOURNAL OF APPLIED ENTOMOLOGY

Worldwide variability of insecticide resistance mechanisms in the codling moth, Cydia pomonella L. (Lepidoptera: Tortricidae)

(2008) M. Reyes et al.   BULLETIN OF ENTOMOLOGICAL RESEARCH

Resistance monitoring in codling moth: a need for standardization

(2008) Maritza Reyes et al.   PEST MANAGEMENT SCIENCE

The evolution of restricted recombination in sex chromosomes

(2008) Roberta Bergero et al.   TRENDS IN ECOLOGY & EVOLUTION

Codling Moth Management and Chemical Ecology

(2007) Peter Witzgall et al.   Annual Review of Entomology