Plasma/serum proteomics: depletion strategies for reducing high-abundance proteins for biomarker discovery

Protein A and protein A/G coupled magnetic SiO 2 microspheres for affinity purification of immunoglobulin G

(2018) Kouroush Salimi et al.   INTERNATIONAL JOURNAL OF BIOLOGICAL MACROMOLECULES

Abundant plasma protein depletion using ammonium sulfate precipitation and Protein A affinity chromatography

(2018) Lentel Pringels et al.   JOURNAL OF CHROMATOGRAPHY B-ANALYTICAL TECHNOLOGIES IN THE BIOMEDICAL AND LIFE SCIENCES

Systematic Evaluation of the Use of Human Plasma and Serum for Mass-Spectrometry-Based Shotgun Proteomics

(2018) Jiayi Lan et al.   JOURNAL OF PROTEOME RESEARCH

Probing the colorectal cancer proteome for biomarkers: Current status and perspectives

(2018) Pey Yee Lee et al.   Journal of Proteomics

Comparative evaluation of seven commercial products for human serum enrichment/depletion by shotgun proteomics

(2018) Salvatore Pisanu et al.   TALANTA

Protein depletion with bacterial cellulose nanofibers

(2018) Ilgım Göktürk et al.   JOURNAL OF CHROMATOGRAPHY B-ANALYTICAL TECHNOLOGIES IN THE BIOMEDICAL AND LIFE SCIENCES

Data‐independent acquisition‐based SWATH‐MS for quantitative proteomics: a tutorial

(2018) Christina Ludwig et al.   Molecular Systems Biology

Supramolecular Polymeric Assemblies for the Selective Depletion of Abundant Acidic Proteins in Serum

(2018) Mahalia A. C. Serrano et al.   ACS Applied Materials & Interfaces

Plasma Proteome Profiling Reveals Dynamics of Inflammatory and Lipid Homeostasis Markers after Roux-En-Y Gastric Bypass Surgery

(2018) Nicolai J. Wewer Albrechtsen et al.   Cell Systems

Molecular Insight into Affinity Interaction between Cibacron Blue and Proteins

(2017) Juan Liang-Schenkelberg et al.   INDUSTRIAL & ENGINEERING CHEMISTRY RESEARCH

Quantitative Proteomics Based on Optimized Data-Independent Acquisition in Plasma Analysis

(2017) Eslam N. Nigjeh et al.   JOURNAL OF PROTEOME RESEARCH

Quantitative, multiplexed workflow for deep analysis of human blood plasma and biomarker discovery by mass spectrometry

(2017) Hasmik Keshishian et al.   Nature Protocols

Plasma protein profiling for potential biomarkers in the early diagnosis of Alzheimer’s disease

(2017) Yuki Kitamura et al.   NEUROLOGICAL RESEARCH

Depletion of abundant human serum proteins by per se imprinted cryogels based on sample heterogeneity

(2017) Chun Yang et al.   PROTEOMICS

Liquid-phase based separation systems for depletion, prefractionation, and enrichment of proteins in biological fluids and matrices for in-depth proteomics analysis-An update covering the period 2014-2016

(2016) Ziad El Rassi et al.   ELECTROPHORESIS

Contributions of immunoaffinity chromatography to deep proteome profiling of human biofluids

(2016) Chaochao Wu et al.   JOURNAL OF CHROMATOGRAPHY B-ANALYTICAL TECHNOLOGIES IN THE BIOMEDICAL AND LIFE SCIENCES

Serum-based protein biomarkers of bladder cancer: A pre- and post-operative evaluation

(2016) Navneeta Bansal et al.   JOURNAL OF PHARMACEUTICAL AND BIOMEDICAL ANALYSIS

Quantitative proteomics revealed novel proteins associated with molecular subtypes of breast cancer

(2016) Shankar Suman et al.   Journal of Proteomics

Proteomics reveals the effects of sustained weight loss on the human plasma proteome

(2016) Philipp E Geyer et al.   Molecular Systems Biology

Plasma Proteome Profiling to Assess Human Health and Disease

(2016) Philipp E. Geyer et al.   Cell Systems

Enhanced Detection of Low-Abundance Human Plasma Proteins by Integrating Polyethylene Glycol Fractionation and Immunoaffinity Depletion

(2016) Zhao Liu et al.   PLoS One

A differential protein solubility approach for the depletion of highly abundant proteins in plasma using ammonium sulfate

(2015) Ravi Chand Bollineni et al.   ANALYST

Capturing and identification of differentially expressed fucome by a gel free and label free approach

(2015) Chanida Puangpila et al.   JOURNAL OF CHROMATOGRAPHY B-ANALYTICAL TECHNOLOGIES IN THE BIOMEDICAL AND LIFE SCIENCES

Quantitative variability of 342 plasma proteins in a human twin population

(2015) Y. Liu et al.   Molecular Systems Biology

Identification of Differentially Expressed Proteins in the Serum of Colorectal Cancer Patients Using 2D-DIGE Proteomics Analysis

(2015) Lay Cheng Lim et al.   PATHOLOGY & ONCOLOGY RESEARCH

Proteomic profiling of human plasma identifies apolipoprotein E as being associated with smoking and a marker for squamous metaplasia of the lung

(2015) Shawn J. Rice et al.   PROTEOMICS

An alternative method for serum protein depletion/enrichment by precipitation at mildly acidic pH values and low ionic strength

(2015) Ann-Kristin Henning et al.   PROTEOMICS

A Novel and Cost Effective Method of Removing Excess Albumin from Plasma/Serum Samples and Its Impacts on LC-MS/MS Bioanalysis of Therapeutic Proteins

(2014) Guowen Liu et al.   ANALYTICAL CHEMISTRY

Combinatorial Peptide Ligand Libraries as a “Trojan Horse” in Deep Discovery Proteomics

(2014) Pier Giorgio Righetti et al.   ANALYTICAL CHEMISTRY

Identification of Potential Serum Biomarkers for Rheumatoid Arthritis by High-Resolution Quantitative Proteomic Analysis

(2014) Yongjing Cheng et al.   INFLAMMATION

Quantitative Proteomic Analysis of Serum Proteins from Oral Cancer Patients: Comparison of Two Analytical Methods

(2014) Yan Yang et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Optimized sample treatment protocol by solid-phase peptide libraries to enrich for protein traces

(2013) Egisto Boschetti et al.   AMINO ACIDS

Molecularly imprinted poly(hydroxyethyl methacrylate) based cryogel for albumin depletion from human serum

(2013) Muge Andac et al.   COLLOIDS AND SURFACES B-BIOINTERFACES

Combinatorial ligand libraries as a two-dimensional method for proteome analysis

(2013) Laura Santucci et al.   JOURNAL OF CHROMATOGRAPHY A

Reproducibility of combinatorial peptide ligand libraries for proteome capture evaluated by selected reaction monitoring

(2013) Francesco Di Girolamo et al.   Journal of Proteomics

Proteomic profiling for the identification of serum diagnostic biomarkers for abdominal and thoracic aortic aneurysms

(2013) Kazumi Satoh et al.   Proteome Science

Cibacron blue immobilized poly(glycidyl-methacrylate) nanobeads for albumin removal in proteome studies

(2013) Müge Andaç   Artificial Cells Nanomedicine and Biotechnology

Depletion of albumin and immunoglobulin G from human serum using epitope-imprinted polymers as artificial antibodies

(2012) Hsueh-Hui Yang et al.   JOURNAL OF BIOMEDICAL MATERIALS RESEARCH PART A

Assessment of Two Immunodepletion Methods: Off-Target Effects and Variations in Immunodepletion Efficiency May Confound Plasma Proteomics

(2012) Bhavinkumar B. Patel et al.   JOURNAL OF PROTEOME RESEARCH

Dye attached poly(hydroxyethyl methacrylate) cryogel for albumin depletion from human serum

(2012) Muge Andac et al.   JOURNAL OF SEPARATION SCIENCE

A comparison of depletion versus equalization for reducing high-abundance proteins in human serum

(2011) Carolina Fernández et al.   ELECTROPHORESIS

Plasma proteomics for biomarker discovery: A study in blue

(2011) Francesco Di Girolamo et al.   ELECTROPHORESIS

Depletion of highly abundant proteins in blood plasma by ammonium sulfate precipitation for 2D-PAGE analysis

(2011) Andrea Mahn et al.   JOURNAL OF CHROMATOGRAPHY B-ANALYTICAL TECHNOLOGIES IN THE BIOMEDICAL AND LIFE SCIENCES

“Cheek-to-cheek” urinary proteome profiling via combinatorial peptide ligand libraries: A novel, unexpected elution system

(2011) Giovanni Candiano et al.   Journal of Proteomics

IgY14 and SuperMix immunoaffinity separations coupled with liquid chromatography–mass spectrometry for human plasma proteomics biomarker discovery

(2011) Tujin Shi et al.   METHODS

A Systematic Analysis of Eluted Fraction of Plasma Post Immunoaffinity Depletion: Implications in Biomarker Discovery

(2011) Amit Kumar Yadav et al.   PLoS One

A systematic analysis of the effects of increasing degrees of serum immunodepletion in terms of depth of coverage and other key aspects in top-down and bottom-up proteomic analyses

(2011) Matthew P. Welberry Smith et al.   PROTEOMICS

High-abundance proteins depletion for serum proteomic analysis: concomitant removal of non-targeted proteins

(2010) Elisa Bellei et al.   AMINO ACIDS

High-abundance protein depletion: Comparison of methods for human plasma biomarker discovery

(2010) Veronika Polaskova et al.   ELECTROPHORESIS

Depletion of Abundant Plasma Proteins and Limitations of Plasma Proteomics

(2010) Chengjian Tu et al.   JOURNAL OF PROTEOME RESEARCH

Bacterial cellulose nanofibers for albumin depletion from human serum

(2010) Emel Tamahkar et al.   PROCESS BIOCHEMISTRY

Reducing agent-mediated precipitation of high-abundance plasma proteins

(2009) Scott E. Warder et al.   ANALYTICAL BIOCHEMISTRY

Depletion of one, six, twelve or twenty major blood proteins before proteomic analysis: The more the better?

(2009) Stéphane Roche et al.   Journal of Proteomics

The dynamic range problem in the analysis of the plasma proteome

(2009) Glen L. Hortin et al.   Journal of Proteomics

Blood-related proteomics

(2009) Giancarlo Liumbruno et al.   Journal of Proteomics

Electrospun regenerated cellulose nanofiber affinity membrane functionalized with protein A/G for IgG purification

(2008) Z MA et al.   JOURNAL OF MEMBRANE SCIENCE

Evaluation of immunoglobulin purification methods and their impact on quality and yield of antigen-specific antibodies

(2008) Elke S Bergmann-Leitner et al.   MALARIA JOURNAL

Reduction of dynamic protein concentration range of biological extracts for the discovery of low-abundance proteins by means of hexapeptide ligand library

(2008) Luc Guerrier et al.   Nature Protocols