RNAseq reveals hydrophobins that are involved in the adaptation of Aspergillus nidulans to lignocellulose

Ionic interaction of positive amino acid residues of fungal hydrophobin RolA with acidic amino acid residues of cutinase CutL1

(2015) Toru Takahashi et al.   MOLECULAR MICROBIOLOGY

Interfacial self-assembly of a bacterial hydrophobin

(2015) Keith M. Bromley et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Fungal biofilm reactor improves the productivity of hydrophobin HFBII

(2014) Mohammadreza Khalesi et al.   BIOCHEMICAL ENGINEERING JOURNAL

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Comparative metabolism of cellulose, sophorose and glucose in Trichoderma reesei using high-throughput genomic and proteomic analyses

(2014) Lilian dos Santos Castro et al.   Biotechnology for Biofuels

Functional characterization of a xylose transporter in Aspergillus nidulans

(2014) Ana Colabardini et al.   Biotechnology for Biofuels

The role of carbon starvation in the induction of enzymes that degrade plant-derived carbohydrates in Aspergillus niger

(2014) Jolanda M. van Munster et al.   FUNGAL GENETICS AND BIOLOGY

How nutritional status signalling coordinates metabolism and lignocellulolytic enzyme secretion

(2014) Neil Andrew Brown et al.   FUNGAL GENETICS AND BIOLOGY

TheAspergillus nidulanssignalling mucin MsbA regulates starvation responses, adhesion and affects cellulase secretion in response to environmental cues

(2014) Neil Andrew Brown et al.   MOLECULAR MICROBIOLOGY

High-Affinity Glucose Transport in Aspergillus nidulans Is Mediated by the Products of Two Related but Differentially Expressed Genes

(2014) Josep V. Forment et al.   PLoS One

Six Hydrophobins Are Involved in Hydrophobin Rodlet Formation in Aspergillus nidulans and Contribute to Hydrophobicity of the Spore Surface

(2014) André Grünbacher et al.   PLoS One

Penicillium decumbens BrlA extensively regulates secondary metabolism and functionally associates with the expression of cellulase genes

(2013) Yuqi Qin et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Functional characterisation of the non-essential protein kinases and phosphatases regulating Aspergillus nidulans hydrolytic enzyme production

(2013) Neil Brown et al.   Biotechnology for Biofuels

The influence of Aspergillus niger transcription factors AraR and XlnR in the gene expression during growth in d-xylose, l-arabinose and steam-exploded sugarcane bagasse

(2013) Wagner Rodrigo de Souza et al.   FUNGAL GENETICS AND BIOLOGY

Strength in numbers: antifungal strategies against fungal biofilms

(2013) Gordon Ramage et al.   INTERNATIONAL JOURNAL OF ANTIMICROBIAL AGENTS

Identification of Glucose Transporters in Aspergillus nidulans

(2013) Thaila Fernanda dos Reis et al.   PLoS One

BslA is a self-assembling bacterial hydrophobin that coats the Bacillus subtilis biofilm

(2013) L. Hobley et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Aspergillus nidulans ATM Kinase Regulates Mitochondrial Function, Glucose Uptake and the Carbon Starvation Response

(2013) Nadia Graciele Krohn et al.   G3-Genes Genomes Genetics

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

(2013) Daehwan Kim et al.   GENOME BIOLOGY

RSeQC: quality control of RNA-seq experiments

(2012) Liguo Wang et al.   BIOINFORMATICS

Hydrophobin Vmh2-glucose complexes self-assemble in nanometric biofilms

(2012) I. Rea et al.   Journal of the Royal Society Interface

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Conserved and essential transcription factors for cellulase gene expression in ascomycete fungi

(2012) S. T. Coradetti et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Uncovering the Genome-Wide Transcriptional Responses of the Filamentous Fungus Aspergillus niger to Lignocellulose Using RNA Sequencing

(2012) Stéphane Delmas et al.   PLoS Genetics

Chemical and morphological characterization of sugarcane bagasse submitted to a delignification process for enhanced enzymatic digestibility

(2011) Camila Rezende et al.   Biotechnology for Biofuels

New resources for functional analysis of omics data for the genus Aspergillus

(2011) Benjamin M Nitsche et al.   BMC GENOMICS

Aspergillus biofilms: clinical and industrial significance

(2011) Gordon Ramage et al.   FEMS MICROBIOLOGY LETTERS

Differential expression in RNA-seq: A matter of depth

(2011) S. Tarazona et al.   GENOME RESEARCH

The Aspergillus Genome Database (AspGD): recent developments in comprehensive multispecies curation, comparative genomics and community resources

(2011) M. B. Arnaud et al.   NUCLEIC ACIDS RESEARCH

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

(2010) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

Engineered Saccharomyces cerevisiae capable of simultaneous cellobiose and xylose fermentation

(2010) S.-J. Ha et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Cellodextrin Transport in Yeast for Improved Biofuel Production

(2010) J. M. Galazka et al.   SCIENCE

Systems analysis of plant cell wall degradation by the model filamentous fungus Neurospora crassa

(2009) Chaoguang Tian et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genomics of cellulosic biofuels

(2008) Edward M. Rubin   NATURE

Genome sequencing and analysis of the biomass-degrading fungus Trichoderma reesei (syn. Hypocrea jecorina)

(2008) Diego Martinez et al.   NATURE BIOTECHNOLOGY