SorGSD: a sorghum genome SNP database

Genome-Wide Association Study on Resistance to Stalk Rot Diseases in Grain Sorghum

(2015) A. Adeyanju et al.   G3-Genes Genomes Genetics

RIG: Recalibration and Interrelation of Genomic Sequence Data with the GATK

(2015) Ryan F. McCormick et al.   G3-Genes Genomes Genetics

Combining Next Generation Sequencing with Bulked Segregant Analysis to Fine Map a Stem Moisture Locus in Sorghum (Sorghum bicolor L. Moench)

(2015) Yucui Han et al.   PLoS One

SNPhylo: a pipeline to construct a phylogenetic tree from huge SNP data

(2014) Tae-Ho Lee et al.   BMC GENOMICS

Genome-Wide Association Study of Grain Polyphenol Concentrations in Global Sorghum [Sorghum bicolor (L.) Moench] Germplasm

(2014) Davina H. Rhodes et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

Energy Sorghum--a genetic model for the design of C4 grass bioenergy crops

(2014) J. Mullet et al.   JOURNAL OF EXPERIMENTAL BOTANY

Digital genotyping of sorghum -- a diverse plant species with a large repeat-rich genome

(2013) Daryl T Morishige et al.   BMC GENOMICS

High-throughput genomics in sorghum: from whole-genome resequencing to a SNP screening array

(2013) Wubishet A. Bekele et al.   PLANT BIOTECHNOLOGY JOURNAL

Extensive Variation in the Density and Distribution of DNA Polymorphism in Sorghum Genomes

(2013) Joseph Evans et al.   PLoS One

Bridging the genotyping gap: using genotyping by sequencing (GBS) to add high-density SNP markers and new value to traditional bi-parental mapping and breeding populations

(2013) Jennifer Spindel et al.   THEORETICAL AND APPLIED GENETICS

A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff

(2012) Pablo Cingolani et al.   FLY

2b-RAD: a simple and flexible method for genome-wide genotyping

(2012) Shi Wang et al.   NATURE METHODS

Population genomic and genome-wide association studies of agroclimatic traits in sorghum

(2012) G. P. Morris et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Single-nucleotide polymorphism discovery by high-throughput sequencing in sorghum

(2011) James C Nelson et al.   BMC GENOMICS

Sweet sorghum as a model system for bioenergy crops

(2011) Martín Calviño et al.   CURRENT OPINION IN BIOTECHNOLOGY

A framework for variation discovery and genotyping using next-generation DNA sequencing data

(2011) Mark A DePristo et al.   NATURE GENETICS

Genotype and SNP calling from next-generation sequencing data

(2011) Rasmus Nielsen et al.   NATURE REVIEWS GENETICS

Genome-wide genetic marker discovery and genotyping using next-generation sequencing

(2011) John W. Davey et al.   NATURE REVIEWS GENETICS

A Robust, Simple Genotyping-by-Sequencing (GBS) Approach for High Diversity Species

(2011) Robert J. Elshire et al.   PLoS One

Genome-wide patterns of genetic variation in sweet and grain sorghum (Sorghum bicolor)

(2011) Lei-Ying Zheng et al.   GENOME BIOLOGY

Fast and accurate long-read alignment with Burrows–Wheeler transform

(2010) Heng Li et al.   BIOINFORMATICS

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

Survey of Genomics Approaches to Improve Bioenergy Traits in Maize, Sorghum and SugarcaneFree Access

(2010) Wilfred Vermerris   Journal of Integrative Plant Biology

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

SNP detection for massively parallel whole-genome resequencing

(2009) R. Li et al.   GENOME RESEARCH

Sorghum in sequence

(2009) Takuji Sasaki et al.   NATURE

The Sorghum bicolor genome and the diversification of grasses

(2009) Andrew H. Paterson et al.   NATURE

PLANT GENETICS: How Sorghum Withstands Heat and Drought

(2009) E. Pennisi   SCIENCE

Maize and sorghum: genetic resources for bioenergy grasses

(2008) Nicholas C. Carpita et al.   TRENDS IN PLANT SCIENCE