Genome-scale metabolic modeling and in silico analysis of lipid accumulating yeastCandida tropicalisfor dicarboxylic acid production

Reconstruction and analysis of a genome-scale metabolic model of the oleaginous fungus Mortierella alpina

(2015) Chao Ye et al.   BMC Systems Biology

In silico model-driven cofactor engineering strategies for improving the overall NADP(H) turnover in microbial cell factories

(2015) Meiyappan Lakshmanan et al.   JOURNAL OF INDUSTRIAL MICROBIOLOGY & BIOTECHNOLOGY

The oxidative pentose phosphate pathway is the primary source of NADPH for lipid overproduction from glucose in Yarrowia lipolytica

(2015) Thomas M. Wasylenko et al.   METABOLIC ENGINEERING

Identification of a critical determinant that enables efficient fatty acid synthesis in oleaginous fungi

(2015) Haiqin Chen et al.   Scientific Reports

The role of malic enzyme as the provider of NADPH in oleaginous microorganisms: a reappraisal and unsolved problems

(2014) Colin Ratledge   BIOTECHNOLOGY LETTERS

Optimizing genome-scale network reconstructions

(2014) Jonathan Monk et al.   NATURE BIOTECHNOLOGY

Constraint-based models predict metabolic and associated cellular functions

(2014) Aarash Bordbar et al.   NATURE REVIEWS GENETICS

Multistep Enzymatic Synthesis of Long-Chain α,ω-Dicarboxylic and ω-Hydroxycarboxylic Acids from Renewable Fatty Acids and Plant Oils

(2013) Ji-Won Song et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

Molecular characterization of a novel isolate ofCandida tropicalisfor enhanced lipid production

(2013) P. Dey et al.   JOURNAL OF APPLIED MICROBIOLOGY

Analysis of metabolic fluxes for better understanding of mechanisms related to lipid accumulation in oleaginous yeast Trichosporon cutaneum

(2012) Zhijie Liu et al.   BIORESOURCE TECHNOLOGY

A genome-scale metabolic model of the lipid-accumulating yeast Yarrowia lipolytica

(2012) Nicolas Loira et al.   BMC Systems Biology

Software applications for flux balance analysis

(2012) M. Lakshmanan et al.   BRIEFINGS IN BIOINFORMATICS

Predicting Gram-positive bacterial protein subcellular localization based on localization motifs

(2012) Yinxia Hu et al.   JOURNAL OF THEORETICAL BIOLOGY

Reconstruction and analysis of the genome-scale metabolic network of Candida glabrata

(2012) Nan Xu et al.   Molecular BioSystems

Reconstruction and In Silico Analysis of Metabolic Network for an Oleaginous Yeast, Yarrowia lipolytica

(2012) Pengcheng Pan et al.   PLoS One

In silico method for modelling metabolism and gene product expression at genome scale

(2012) Joshua A. Lerman et al.   Nature Communications

Fungal Gene Expression on Demand: an Inducible, Tunable, and Metabolism-Independent Expression System for Aspergillus niger

(2011) Vera Meyer et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Recent advances in reconstruction and applications of genome-scale metabolic models

(2011) Tae Yong Kim et al.   CURRENT OPINION IN BIOTECHNOLOGY

Alternative routes of acetyl-CoA synthesis identified by comparative genomic analysis: involvement in the lipid production of oleaginous yeast and fungi

(2011) T. Vorapreeda et al.   MICROBIOLOGY-SGM

Transcriptomic Analyses during the Transition from Biomass Production to Lipid Accumulation in the Oleaginous Yeast Yarrowia lipolytica

(2011) Nicolas Morin et al.   PLoS One

The biomass objective function

(2010) Adam M Feist et al.   CURRENT OPINION IN MICROBIOLOGY

A protocol for generating a high-quality genome-scale metabolic reconstruction

(2010) Ines Thiele et al.   Nature Protocols

BRENDA, the enzyme information system in 2011

(2010) M. Scheer et al.   NUCLEIC ACIDS RESEARCH

Connecting extracellular metabolomic measurements to intracellular flux states in yeast

(2009) Monica L Mo et al.   BMC Systems Biology

Evolution of pathogenicity and sexual reproduction in eight Candida genomes

(2009) Geraldine Butler et al.   NATURE

Inhibition of the fungal fatty acid synthase type I multienzyme complex

(2008) P. Johansson et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA