4.8 Article

Illumina MiSeq sequencing reveals long-term impacts of single-walled carbon nanotubes on microbial communities of wastewater treatment systems

Journal

BIORESOURCE TECHNOLOGY
Volume 211, Issue -, Pages 209-215

Publisher

ELSEVIER SCI LTD
DOI: 10.1016/j.biortech.2016.03.043

Keywords

Single-walled carbon nanotubes; Phenol; Microbial community; Illumina MiSeq sequencing

Funding

  1. National Natural Science Foundation of China [21176040, 51508068]
  2. Program for New Century Excellent Talents in University [NCET-13-0077]
  3. Fundamental Research Funds for the Central Universities [DUT14YQ107]
  4. Open Project of State Key Laboratory of Urban Water Resource and Environment, Harbin Institute of Technology [ESK201529]

Ask authors/readers for more resources

In this study, phenol wastewater treatment systems treated with different concentrations of single-walled carbon nanotubes (SWCNTs) (0-3.5 g/L) were exposed to phenol and carbon nanotubes (CNTs) shock loadings to investigate the long-term impacts of SWCNTs on microbial communities. Phenol removal remained high efficiency (>98%) in SWCNTs-treated groups but decreased in non-treated group (85.1 +/- 1.9%) when exposed to high concentration of phenol (500 mg/L). However, secondary dosing of SWCNTs in SWCNTs-treated groups would decrease the phenol removal efficiency. Illumina MiSeq sequencing revealed that the diversity, richness and structure of microbial communities were shifted under phenol shock loading, especially under high phenol concentration, but not under CNTs shock loading. In response to phenol and CNTs shock loadings, Rudaea, Burkholderia, Sphingomonas, Acinetobacter, Methylocystis and Thauera became dominant genera, which should be involved in phenol removal. These results suggested that a proper amount of SWCNTs might have positive effects on phenol wastewater treatment systems. (C) 2016 Elsevier Ltd. All rights reserved.

Authors

I am an author on this paper
Click your name to claim this paper and add it to your profile.

Reviews

Primary Rating

4.8
Not enough ratings

Secondary Ratings

Novelty
-
Significance
-
Scientific rigor
-
Rate this paper

Recommended

Article Environmental Sciences

Succession of diversity, functions, and interactions of the fungal community in activated sludge under aromatic hydrocarbon stress

Shuzhen Li, Ye Deng, Shengyang Lian, Chunxiao Dai, Qiao Ma, Yuanyuan Qu

Summary: This study systematically investigated the responses of fungal communities under continuous aromatic hydrocarbon stress and found a decreasing trend in fungal diversity during the treatment. Community succession was observed, with an increase in the relative abundance of some typical degraders. Predicted functions of the fungal community suggested the importance of certain enzymes in degradation processes. The study also demonstrated the deterministic assembly process of fungal communities under continuous aromatic hydrocarbon stress, with environmental selection dominating succession.

ENVIRONMENTAL RESEARCH (2022)

Article Environmental Sciences

Succession of function, assembly, and interaction of microbial community in sequencing biofilm batch reactors under selenite stress

Shengyang Lian, Yuanyuan Qu, Chunxiao Dai, Shuzhen Li, Jiawei Jing, Lu Sun, Ying Yang

Summary: This study investigates the mechanism of interaction between selenite and microbial community in wastewater and systematically examines the key factors affecting this interaction. The results reveal significant effects of selenite on reactor performance and the structure, composition, and function of the microbial community. The study also highlights the connection between selenite and microbial networks and the regulatory role of selenite in competition and parasitism/predation among microorganisms.

ENVIRONMENTAL RESEARCH (2022)

Article Engineering, Environmental

DARHD: A sequence database for aromatic ring-hydroxylating dioxygenase analysis and primer evaluation

Shuzhen Li, Wenli Shen, Shengyang Lian, Yueni Wu, Yuanyuan Qu, Ye Deng

Summary: This study established a sequence database for the ARHD alpha subunit, and found the lack of understanding on the diversity and primer coverage of ARHD alpha subunit. The results showed low coverage of most published primers.

JOURNAL OF HAZARDOUS MATERIALS (2022)

Article Environmental Sciences

The large-scale spatial patterns of ecological networks between phytoplankton and zooplankton in coastal marine ecosystems

Zheng Zhang, Hongjun Li, Wenli Shen, Xiongfeng Du, Shuzhen Li, Ziyan Wei, Zhaojing Zhang, Kai Feng, Ye Deng

Summary: Although the autotrophic phytoplankton and heterotrophic zooplankton are important in marine ecosystems, their interactions and spatial patterns have not been well studied at a continental scale. This study collected seawater samples along the Chinese coastline and investigated the diversity of planktonic organisms. Using a new approach called Inter-Domain Ecological Networks (IDENs), the interaction networks between phytoplankton and zooplankton were constructed. The results showed that the structure of the phyto-zooplankton network varied across different regions, with more complexity and connections in the southern coast. Additionally, specific associations between zooplankton and phytoplankton groups were found to be localized in certain regions. The seawater temperature and salinity were identified as the major driving forces shaping these planktonic interaction networks.

SCIENCE OF THE TOTAL ENVIRONMENT (2022)

Article Microbiology

Ectopic Colonization and Immune Landscapes of Periodontitis Microbiota in Germ-Free Mice With Streptozotocin-Induced Type 1 Diabetes Mellitus

Xin Shen, Hong Wei, Jian Li, Wei Wei, Bo Zhang, Changqing Lu, Caixia Yan, Shuzhen Li, Lirong Bao, Jinmei Zhang, Cheng Zhang, Yan Li

Summary: The relationship between diabetes and periodontitis has been explored recently. This study investigated the immune regulatory effects of periodontitis microbiota on diabetes and the correlation between immunomodulation and ectopic colonization. The findings suggest that periodontitis microbiota can invade extra-oral sites and cause immune cells infiltration, leading to local or systemic inflammation which may worsen diabetes.

FRONTIERS IN MICROBIOLOGY (2022)

Article Agriculture, Multidisciplinary

Grass-legume mixtures enhance forage production via the bacterial community

Huilin Yan, Songsong Gu, Shuzhen Li, Wenli Shen, Xueli Zhou, Hao Yu, Kun Ma, Yangan Zhao, Yingcheng Wang, Hua Zheng, Ye Deng, Guangxin Lu

Summary: This study investigates the effects of grass-legume mixtures and monocultures on forage production and rhizosphere bacterial communities. The results show that grass-legume mixtures significantly increase forage production and alter the structure and composition of the grass rhizosphere bacterial community. The legume plays a significant role in influencing the grass rhizosphere. Additionally, the grass-legume mixtures provide favorable conditions for microbial interactions.

AGRICULTURE ECOSYSTEMS & ENVIRONMENT (2022)

Article Environmental Sciences

Fungal dynamics and potential functions during anaerobic digestion of food waste

Xingsheng Yang, Zhaojing Zhang, Shuzhen Li, Qing He, Xi Peng, Xiongfeng Du, Kai Feng, Shang Wang, Ye Deng

Summary: This study investigated fungal succession and their ecological and engineering value in anaerobic digestion (AD) systems using food waste. The results showed that fungal biomass and diversity followed a similar pattern, decreasing from the initial time point and then rising and stabilizing. The dominant fungal taxa had the potential to degrade complex organic matter and alleviate fatty acid and ammonia accumulation. The fungal community structure and composition changed during the AD process, and the assembly succession was mainly determined by environmental changes. AD bioreactors could select specific fungal taxa over time, but function prediction based on existing databases may underestimate fungal function. Overall, fungi have important ecological and engineering values in AD systems.

ENVIRONMENTAL RESEARCH (2022)

Article Environmental Sciences

Disentangling biogeographic and underlying assembly patterns of fungal communities in metalliferous mining and smelting soils

Bang Liu, Jun Yao, Bo Ma, Shuzhen Li, Robert Duran

Summary: This study analyzed the fungal communities in soils around mining and smelting sites to investigate the geographical distribution patterns and the impact of metal and geographical factors on fungal communities.

SCIENCE OF THE TOTAL ENVIRONMENT (2022)

Article Microbiology

The Stability of Phyto-Zooplanktonic Networks Varied with Zooplanktonic Sizes in Chinese Coastal Ecosystem

Zheng Zhang, Hongjun Li, Wenli Shen, Kai Feng, Shuzhen Li, Songsong Gu, Yuqi Zhou, Xi Peng, Xiongfeng Du, Qing He, Linlin Wang, Zhaojing Zhang, Danrui Wang, Zhujun Wang, Ye Deng

Summary: The linkages between phytoplankton and zooplankton are crucial for the stability of complex food webs and the flow of energy within the marine ecosystem. This study found that zooplanktonic body sizes have significant negative effects on the topological properties of phyto-zooplanktonic networks (PZNs), with smaller zooplankton associated with more complex and stable networks. Additionally, abiotic factors and environmental factors were found to significantly influence PZNs, and the relationship between zooplanktonic body sizes and environmental factors played a role in shaping network structure.

MSYSTEMS (2022)

Article Environmental Sciences

Transcriptomic profiling reveals the molecular responses of Rhodococcus aetherivorans DMU1 to skatole stress

Yujie Li, Qiao Ma, Jiaxin Zhang, Nan Meng, Jiancheng Su, Jingwei Wang

Summary: Rhodococcus aetherivorans DMU1 strain efficiently degrades skatole, with its degradation ability influenced by temperature and pH. The expression of antioxidant defense system and heat shock protein genes increased, while ribosome-related gene expression was significantly inhibited in strain DMU1 grown in skatole-containing medium. Furthermore, a novel gene cluster containing flavoprotein monooxygenase and ring-hydroxylating oxygenase genes was highly up-regulated, and the functional gene cat25170 was verified to catalyze catechol.

ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY (2023)

Article Environmental Sciences

Spatial distribution patterns across multiple microbial taxonomic groups

Xiongfeng Du, Songsong Gu, Zheng Zhang, Shuzhen Li, Yuqi Zhou, Zhaojing Zhang, Qi Zhang, Linlin Wang, Zhicheng Ju, Chengliang Yan, Tong Li, Danrui Wang, Xingsheng Yang, Xi Peng, Ye Deng

Summary: Soil bacterial communities in a coastal area follow a distance-decay relationship and the distribution is influenced by body size. This study collected soil samples from two adjacent ecosystems and found that the entire microbial community, as well as individual taxonomic groups, exhibited distance-decay patterns. The turnover rate of microbial communities was higher in nontidal soils and topsoil, with body size influencing the spatial limitation in nontidal topsoil but not in tidal soils.

ENVIRONMENTAL RESEARCH (2023)

Article Engineering, Environmental

QSP: An open sequence database for quorum sensing related gene analysis with an automatic annotation pipeline

Chunxiao Dai, Yuanyuan Qu, Weize Wu, Shuzhen Li, Zhuo Chen, Shengyang Lian, Jiawei Jing

Summary: This study established a QS-related protein database and an automatic annotation pipeline for rapid and accurate annotation and classification of QS-related sequences in aquatic environments. It provides a useful tool for understanding bacterial communication in water environments.

WATER RESEARCH (2023)

Article Engineering, Environmental

Environmental DNA metabarcoding reveals the influence of human activities on microeukaryotic plankton along the Chinese coastline

Zheng Zhang, Jiang Li, Hongjun Li, Linlin Wang, Yuqi Zhou, Shuzhen Li, Zhaojing Zhang, Kai Feng, Ye Deng

Summary: In this study, the biogeographic patterns of microeukaryotic plankton diversity, community structure, and co-occurrence patterns were investigated using environmental DNA methods. The results showed a unimodal pattern of planktonic alpha diversity with latitude, and nutrient-related factors were found to be the main drivers of spatial patterns. Additionally, significant regional biogeographic patterns and potential drivers for planktonic communities were identified, with inorganic nitrogen and heavy metals having the greatest impact. Furthermore, the study revealed that anthropogenic activity factors strongly influenced the networked topology and structure of the planktonic community.

WATER RESEARCH (2023)

Article Environmental Sciences

Long-term influence of chloroxylenol on anaerobic microbial community: Performance, microbial interaction, and antibiotic resistance gene behaviors

Jingwei Wang, Shuang Shan, Da Li, Zhaojing Zhang, Qiao Ma

Summary: The use of antibacterial and disinfection products has been increasing recently. This study investigated the impacts of long-term exposure to para-chloro-meta-xylenol (PCMX), a widely used antimicrobial agent, on anaerobic sequencing batch reactors. High concentration of PCMX severely inhibited the nutrient removal process, while low concentration slightly affected the removal efficiency which recovered after 120 days. PCMX inactivated the microbes and shifted the microbial communities, leading to a reduction in diversity and complexity. The study also found that PCMX affected the behavior of antibiotic resistance genes (ARGs), with potential risks in ecosystems.

SCIENCE OF THE TOTAL ENVIRONMENT (2023)

Article Ecology

Assessment of microbial alpha-diversity in one meter squared topsoil

Shuzhen Li, Xiongfeng Du, Kai Feng, Yueni Wu, Qing He, Zhujun Wang, Yangying Liu, Danrui Wang, Xi Peng, Zhaojing Zhang, Arthur Escalas, Yuanyuan Qu, Ye Deng

Summary: The estimation of microbial species richness in topsoil remains challenging due to the significant diversity. Through intensive surveys and massive data sets, it was found that there are tens of thousands of prokaryotic species in 1 m(2) topsoil, with significant differences among clustering tools. Insufficient sequencing depth can greatly underestimate the richness of microbial species.

SOIL ECOLOGY LETTERS (2022)

Article Agricultural Engineering

Carbamazepine facilitated horizontal transfer of antibiotic resistance genes by enhancing microbial communication and aggregation

Yinping Xiang, Meiying Jia, Rui Xu, Jialu Xu, Lele He, Haihao Peng, Weimin Sun, Dongbo Wang, Weiping Xiong, Zhaohui Yang

Summary: This study investigated the impact of the non-antibiotic pharmaceutical carbamazepine on antibiotic resistance genes (ARGs) during anaerobic digestion. The results showed that carbamazepine induced the enrichment of ARGs and increased the abundance of bacteria carrying these genes. It also facilitated microbial aggregation and intercellular communication, leading to an increased frequency of ARGs transmission. Moreover, carbamazepine promoted the acquisition of ARGs by pathogens and elevated their overall abundance.

BIORESOURCE TECHNOLOGY (2024)

Review Agricultural Engineering

A review of microbial responses to biochar addition in anaerobic digestion system: Community, cellular and genetic level findings

Weixin Zhao, Tianyi Hu, Hao Ma, Dan Li, Qingliang Zhao, Junqiu Jiang, Liangliang Wei

Summary: This review summarizes the effects and potential mechanisms of biochar on microbial behavior in AD systems. The addition of biochar has been found to promote microbial colonization, alleviate stress, provide nutrients, and enhance enzyme activity. Future research directions include targeted design of biochar, in-depth study of microbial mechanisms, and improved models.

BIORESOURCE TECHNOLOGY (2024)

Review Agricultural Engineering

Advances in nitrogen removal and recovery technologies from reject water: Economic and environmental perspectives

Christina Karmann, Anna Magrova, Pavel Jenicek, Jan Bartacek, Vojtech Kouba

Summary: This review assesses nitrogen removal technologies in reject water treatment, highlighting the differences in environmental impacts and economic benefits. Partial nitritation-anammox shows potential for economic benefits and positive environmental outcomes when operated and controlled properly.

BIORESOURCE TECHNOLOGY (2024)

Article Agricultural Engineering

Layered double hydroxide loaded pinecone biochar as adsorbent for heavy metals and phosphate ion removal from water

Wei-Hao Huang, Ying-Ju Chang, Duu-Jong Lee

Summary: This study modified pinecone biochar with layered double hydroxide (LDH) to enhance its adsorption capacity for heavy metal and phosphate ions. The LDH-biochar showed significantly improved adsorption capacities for Pb2+ and phosphate, and a slight increase for Cu2+ and Co2+. The LDH layer enhanced the adsorption through various mechanisms.

BIORESOURCE TECHNOLOGY (2024)

Article Agricultural Engineering

Machine learning-based prediction of methane production from lignocellulosic wastes

Chao Song, Fanfan Cai, Shuang Yang, Ligong Wang, Guangqing Liu, Chang Chen

Summary: This paper developed a machine learning model to predict the biochemical methane potential during anaerobic digestion. Model analysis identified lignin content, organic loading, and nitrogen content as key attributes for methane production prediction. For feedstocks with high cellulose content, early methane production is lower but can be improved by prolonging digestion time. Moreover, lignin content exceeding a certain value significantly inhibits methane production.

BIORESOURCE TECHNOLOGY (2024)

Article Agricultural Engineering

Engineering of Yarrowia lipolytica as a platform strain for producing adipic acid from renewable resource

Sang Min Lee, Ju Young Lee, Ji-Sook Hahn, Seung-Ho Baek

Summary: This study successfully developed an efficient platform strain using Yarrowia lipolytica for the bioconversion of renewable resources into adipic acid, achieving a remarkable increase in production level.

BIORESOURCE TECHNOLOGY (2024)

Article Agricultural Engineering

Synergies of pH-induced calcium phosphate precipitation and magnetic separation for energy-efficient harvesting of freshwater microalgae

Sefkan Kendir, Matthias Franzreb

Summary: This study presents a novel approach using magnetic separation to efficiently harvest freshwater microalgae, Chlorella vulgaris. By combining pH-induced calcium phosphate precipitation with cheap natural magnetite microparticles, harvesting efficiencies up to 98% were achieved in the model medium.

BIORESOURCE TECHNOLOGY (2024)

Article Agricultural Engineering

Solvothermal liquefaction of orange peels into biocrude: An experimental investigation of biocrude yield and energy compositional dependency on process variables

Ishaq Kariim, Ji-Yeon Park, Wajahat Waheed Kazmi, Hulda Swai, In-Gu Lee, Thomas Kivevele

Summary: The impact of reaction temperature, residence time, and ethanol: acetone on the energy compositions and yield enhancement of biocrudes was investigated. The results showed that under appropriate conditions, biocrudes with high energy and low oxygen content can be obtained, indicating a high potential for utilization.

BIORESOURCE TECHNOLOGY (2024)

Article Agricultural Engineering

Enhancing nitrogen removal performance through intermittent aeration in continuous plug-flow anaerobic/aerobic/anoxic process treating low-strength municipal sewage

Xiyue Zhang, Xiyao Li, Liang Zhang, Yongzhen Peng

Summary: Intermittent aeration is an innovative approach to enhance nitrogen removal in low carbon-to-nitrogen ratio municipal sewage, providing an efficient strategy for the continuous plug-flow AOA process.

BIORESOURCE TECHNOLOGY (2024)

Article Agricultural Engineering

Mechanism of magnetite-assisted aerobic composting on the nitrogen cycle in pig manure

Xu Yang, Mahmoud Mazarji, Mengtong Li, Aohua Li, Ronghua Li, Zengqiang Zhang, Junting Pan

Summary: This study investigated the impact of magnetite on the nitrogen cycle of pig manure biostabilisation. The addition of magnetite increased N2O emissions and decreased NH3 emissions during composting. It also increased the total nitrogen content but should be considered for its significant increase in N2O emissions in engineering practice.

BIORESOURCE TECHNOLOGY (2024)

Review Agricultural Engineering

Recent advances in microalgal production, harvesting, prediction, optimization, and control strategies

Ty Shitanaka, Haylee Fujioka, Muzammil Khan, Manpreet Kaur, Zhi-Yan Du, Samir Kumar Khanal

Summary: The market value of microalgae has exponentially increased in the past two decades, thanks to their applications in various industries. However, the supply of high-value microalgal bioproducts is limited due to several factors, and strategies are being explored to overcome these limitations and improve microalgae production, thus increasing the availability of algal-derived bioproducts in the market.

BIORESOURCE TECHNOLOGY (2024)

Article Agricultural Engineering

Efficient supply with carbon dioxide from flue gas during large scale production of microalgae: A novel approach for bioenergy facades

Martin Kerner, Thorsten Wolff, Torsten Brinkmann

Summary: The efficiency of using enriched CO2 from flue gas for large-scale production of green microalgae has been studied. The results show that the use of membrane devices and static mixers can effectively improve the CO2 recovery rate and maintain the suitable pH and temperature during cultivation, achieving a more economical and sustainable microalgae production.

BIORESOURCE TECHNOLOGY (2024)

Article Agricultural Engineering

Carbon dioxide and methane as carbon source for the production of polyhydroxyalkanoates and concomitant carbon fixation

Rui Ma, Ji Li, Rd Tyagi, Xiaolei Zhang

Summary: This review summarizes the microorganisms capable of using CO2 and CH4 to produce PHAs, illustrating the production process, factors influencing it, and discussing optimization techniques. It identifies the challenges and future prospects for developing economically viable PHAs production using GHGs as a carbon source.

BIORESOURCE TECHNOLOGY (2024)

Article Agricultural Engineering

Contribution of zeolite to nitrogen retention in chicken manure and straw compost: Reduction of NH3 and N2O emissions and increase of nitrate

Bing Wang, Peng Zhang, Xu Guo, Xu Bao, Junjie Tian, Guomin Li, Jian Zhang

Summary: The addition of zeolite in the co-composting of chicken manure and straw significantly reduced the emissions of ammonia and N2O, and increased the nitrate content. Zeolite also promoted the abundance of nitrification genes and inhibited the expression of denitrification genes.

BIORESOURCE TECHNOLOGY (2024)

Article Agricultural Engineering

Exploring advanced phycoremediation strategies for resource recovery from secondary wastewater using a large scale photobioreactor

Rohit Dey, Franziska Ortiz Tena, Song Wang, Josef Martin Messmann, Christian Steinweg, Claudia Thomsen, Clemens Posten, Stefan Leu, Matthias S. Ullrich, Laurenz Thomsen

Summary: This study investigated the operation of a 1000L microalgae-based membrane photobioreactor system for continuous secondary wastewater treatment. The research focused on a green microalgae strain called Desmodesmus sp. The study aimed to understand key trends and optimization strategies by conducting experiments in both summer and winter seasons. The findings showed that maintaining low cell concentrations during periods of light inhibition was beneficial for nutrient uptake rates. Effective strategies for enhancing algae-based wastewater treatment included cell mass recycling and adjusting dilution rates based on light availability.

BIORESOURCE TECHNOLOGY (2024)