A ligand-gated strand displacement mechanism for ZTP riboswitch transcription control
Published 2019 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
A ligand-gated strand displacement mechanism for ZTP riboswitch transcription control
Authors
Keywords
-
Journal
Nature Chemical Biology
Volume 15, Issue 11, Pages 1067-1076
Publisher
Springer Science and Business Media LLC
Online
2019-10-22
DOI
10.1038/s41589-019-0382-7
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- A functional genetic screen reveals sequence preferences within a key tertiary interaction in cobalamin riboswitches required for ligand selectivity
- (2018) Jacob T Polaski et al. NUCLEIC ACIDS RESEARCH
- A multicolor riboswitch-based platform for imaging of RNA in live mammalian cells
- (2018) Esther Braselmann et al. Nature Chemical Biology
- High-throughput determination of RNA structures
- (2018) Eric J. Strobel et al. NATURE REVIEWS GENETICS
- Gene regulation by a glycine riboswitch singlet uses a finely tuned energetic landscape for helical switching
- (2018) Chad D Torgerson et al. RNA
- Ligand Modulates Cross-Coupling between Riboswitch Folding and Transcriptional Pausing
- (2018) Julia R. Widom et al. MOLECULAR CELL
- Self-cleavage of the glmS ribozyme core is controlled by a fragile folding element
- (2018) Andrew Savinov et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Technique Development for Probing RNA Structure In Vivo and Genome-Wide
- (2018) Philip C. Bevilacqua et al. Cold Spring Harbor Perspectives in Biology
- An excited state underlies gene regulation of a transcriptional riboswitch
- (2017) Bo Zhao et al. Nature Chemical Biology
- Recurrent RNA motifs as scaffolds for genetically encodable small-molecule biosensors
- (2017) Ely B Porter et al. Nature Chemical Biology
- Distributed biotin–streptavidin transcription roadblocks for mapping cotranscriptional RNA folding
- (2017) Eric J. Strobel et al. NUCLEIC ACIDS RESEARCH
- Riboswitch diversity and distribution
- (2017) Phillip J. McCown et al. RNA
- The lost language of the RNA World
- (2017) James W. Nelson et al. Science Signaling
- Transcriptional pausing at the translation start site operates as a critical checkpoint for riboswitch regulation
- (2017) Adrien Chauvier et al. Nature Communications
- The lost language of the RNA World
- (2017) James W. Nelson et al. Science Signaling
- Characterizing RNA structures in vitro and in vivo with selective 2′-hydroxyl acylation analyzed by primer extension sequencing (SHAPE-Seq)
- (2016) Kyle E. Watters et al. METHODS
- Cotranscriptional folding of a riboswitch at nucleotide resolution
- (2016) Kyle E Watters et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- A Two-Way Street: Regulatory Interplay between RNA Polymerase and Nascent RNA Structure
- (2016) Jinwei Zhang et al. TRENDS IN BIOCHEMICAL SCIENCES
- Cotranscriptional folding of a riboswitch at nucleotide resolution
- (2016) Kyle E Watters et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- Metal Ion-Mediated Nucleobase Recognition by the ZTP Riboswitch
- (2015) Jeremiah J. Trausch et al. CHEMISTRY & BIOLOGY
- An Ancient Riboswitch Class in Bacteria Regulates Purine Biosynthesis and One-Carbon Metabolism
- (2015) Peter B. Kim et al. MOLECULAR CELL
- Massively Systematic Transcript End Readout, “MASTER”: Transcription Start Site Selection, Transcriptional Slippage, and Transcript Yields
- (2015) Irina O. Vvedenskaya et al. MOLECULAR CELL
- Selective small-molecule inhibition of an RNA structural element
- (2015) John A. Howe et al. NATURE
- Recognition of the bacterial alarmone ZMP through long-distance association of two RNA subdomains
- (2015) Christopher P Jones et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- Two transcription pause elements underlie a σ70-dependent pause cycle
- (2015) Eric J. Strobel et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Structural analysis of a class III preQ1riboswitch reveals an aptamer distant from a ribosome-binding site regulated by fast dynamics
- (2015) Joseph A. Liberman et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Global RNA Fold and Molecular Recognition for a pfl Riboswitch Bound to ZMP, a Master Regulator of One-Carbon Metabolism
- (2015) Aiming Ren et al. STRUCTURE
- Recognition of the bacterial alarmone ZMP through long-distance association of two RNA subdomains
- (2015) Christopher P Jones et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- RNA polymerase pausing and nascent-RNA structure formation are linked through clamp-domain movement
- (2014) Pyae P Hein et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- A pause sequence enriched at translation start sites drives transcription dynamics in vivo
- (2014) M. H. Larson et al. SCIENCE
- Interactions between RNA polymerase and the "core recognition element" counteract pausing
- (2014) I. O. Vvedenskaya et al. SCIENCE
- Infernal 1.1: 100-fold faster RNA homology searches
- (2013) E. P. Nawrocki et al. BIOINFORMATICS
- RNA-Based Fluorescent Biosensors for Live Cell Imaging of Second Messengers Cyclic di-GMP and Cyclic AMP-GMP
- (2013) Colleen A. Kellenberger et al. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
- On the importance of cotranscriptional RNA structure formation
- (2013) D. Lai et al. RNA
- An RNA Mapping DataBase for curating RNA structure mapping experiments
- (2012) Pablo Cordero et al. BIOINFORMATICS
- Transcriptional pausing coordinates folding of the aptamer domain and the expression platform of a riboswitch
- (2012) G. A. Perdrizet et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Direct Observation of Cotranscriptional Folding in an Adenine Riboswitch
- (2012) K. L. Frieda et al. SCIENCE
- RNAstructure: software for RNA secondary structure prediction and analysis
- (2010) Jessica S Reuter et al. BMC BIOINFORMATICS
- Riboswitches: Structures and Mechanisms
- (2010) A. D. Garst et al. Cold Spring Harbor Perspectives in Biology
- Applied Force Reveals Mechanistic and Energetic Details of Transcription Termination
- (2008) Matthew H. Larson et al. CELL
- RNA dynamics: it is about time
- (2008) Hashim M Al-Hashimi et al. CURRENT OPINION IN STRUCTURAL BIOLOGY
Find Funding. Review Successful Grants.
Explore over 25,000 new funding opportunities and over 6,000,000 successful grants.
ExploreDiscover Peeref hubs
Discuss science. Find collaborators. Network.
Join a conversation