4.7 Article

Design and development of new class of Mycobacterium tuberculosis L-alanine dehydrogenase inhibitors

Journal

BIOORGANIC & MEDICINAL CHEMISTRY
Volume 24, Issue 18, Pages 4499-4508

Publisher

PERGAMON-ELSEVIER SCIENCE LTD
DOI: 10.1016/j.bmc.2016.07.051

Keywords

Tuberculosis; Mycobacterium tuberculosis; Alanine dehydrogenase; Azetidine-2,4-dicarboxamide

Funding

  1. Department of Biotechnology, Government of India
  2. Department of Science and Technology, Government of India

Ask authors/readers for more resources

Mycobacterium tuberculosis L-alanine dehydrogenase (MTB L-AlaDH) is one of the important drug targets for treating latent/persistent tuberculosis. In this study we used crystal structure of the MTB L-AlaDH bound with cofactor NAD(+) as a structural framework for virtual screening of our in-house database to identified new classes of L-AlaDH inhibitor. We identified azetidine-2,4-dicarboxamide derivative as one of the potent inhibitor with IC50 of 9.22 +/- 0.72 mu M. Further lead optimization by synthesis leads to compound 1-(isonicotinamido)-N-2,N-4-bis(benzo[d]thiazol-2-yl)azetidine-2,4-dicarboxamide (18) with L-AlaDH IC50 of 3.83 +/- 0.12 mu M, 2.0log reduction in nutrient starved dormant MTB model and MIC of 11.81 mu M in actively replicative MTB. (C) 2016 Elsevier Ltd. All rights reserved.

Authors

I am an author on this paper
Click your name to claim this paper and add it to your profile.

Reviews

Primary Rating

4.7
Not enough ratings

Secondary Ratings

Novelty
-
Significance
-
Scientific rigor
-
Rate this paper

Recommended

Article Chemistry, Medicinal

Synthesis and anti-mycobacterial activity of 4-(4-phenyl-1H-1,2,3-triazol-1-yl)salicylhydrazones: revitalizing an old drug

Hajjaj H. M. Abdu-Allah, Bahaa G. M. Youssif, Mostafa H. Abdelrahman, Mohammed K. Abdel-Hamid, Rudraraju Srilakshmi Reshma, Perumal Yogeeswari, Tarek Aboul-Fadl, Dharmarajan Sriram

ARCHIVES OF PHARMACAL RESEARCH (2017)

Article Chemistry, Medicinal

Structure-Guided Discovery of Antitubercular Agents That Target the Gyrase ATPase Domain

Variam U. Jeankumar, Shalini Saxena, Rahul Vats, Rudraraju Srilakshmi Reshma, Renuka Janupally, Pushkar Kulkarni, Perumal Yogeeswari, Dharmarajan Sriram

CHEMMEDCHEM (2016)

Article Chemistry, Medicinal

Engineering another class of anti-tubercular lead: Hit to lead optimization of an intriguing class of gyrase ATPase inhibitors

Variam Ullas Jeankumar, Rudraraju Srilakshmi Reshma, Rahul Vats, Renuka Janupally, Shalini Saxena, Perumal Yogeeswari, Dharmarajan Sriram

EUROPEAN JOURNAL OF MEDICINAL CHEMISTRY (2016)

Article Chemistry, Medicinal

Inhibitors of the Cysteine Synthase CysM with Antibacterial Potency against Dormant Mycobacterium tuberculosis

Katharina Brunner, Selma Maric, Rudraraju Srilakshmi Reshma, Helena Almqvist, Brinton Seashore-Ludlow, Anna-Lena Gustavsson, Omer Poyraz, Perumal Yogeeswari, Thomas Lundback, Michaela Vallin, Dharmarajan Sriram, Robert Schnell, Gunter Schneider

JOURNAL OF MEDICINAL CHEMISTRY (2016)

Article Biochemistry & Molecular Biology

Lead identification and optimization of bacterial glutamate racemase inhibitors

Prasanthi Malapati, Vagolu Siva Krishna, Radhika Nallangi, Nikhila Meda, Rudraraju Reshma Srilakshmi, Dharmarajan Sriram

BIOORGANIC & MEDICINAL CHEMISTRY (2018)

Article Biochemistry & Molecular Biology

Synthesis, in vitro, and in vivo (Zebra fish) antitubercular activity of 7,8-dihydroquinolin-5(6H)-ylidenehydrazinecarbothioamides

Sandeep Kumar Marvadi, Vagolu Siva Krishna, Goverdhan Surineni, Rudraraju Srilakshmi Reshma, Balasubramanian Sridhar, Dharmarajan Sriram, Srinivas Kantevari

BIOORGANIC CHEMISTRY (2020)

Article Biochemistry & Molecular Biology

A FabG inhibitor targeting an allosteric binding site inhibits several orthologs from Gram-negative ESKAPE pathogens

Peter Vella, Reshma Srilakshmi Rudraraju, Thomas Lundback, Hanna Axelsson, Helena Almqvist, Michaela Vallin, Gunter Schneider, Robert Schnell

Summary: The spread of antibiotic resistance within the ESKAPE group of human pathogenic bacteria poses challenges in treatment, motivating efforts to validate FabG enzymes as potential targets for antibiotic development. Small-molecule screening identified mu M inhibitors that bind at an allosteric site in the FabG structure, potentially interfering with fatty acid biosynthesis in clinically relevant ESKAPE pathogens.

BIOORGANIC & MEDICINAL CHEMISTRY (2021)

Article Chemistry, Multidisciplinary

Engineering of Ancestors as a Tool to Elucidate Structure, Mechanism, and Specificity of Extant Terpene Cyclase

Karen Schriever, Patricia Saenz-Mendez, Reshma Srilakshmi Rudraraju, Natalie M. Hendrikse, Elton P. Hudson, Antonino Biundo, Robert Schnell, Per-Olof Syren

Summary: Structural information is essential for understanding catalytic mechanisms and guiding enzyme engineering efforts. By engineering thermostable ancestral enzymes, reliable homology models of extant biocatalysts can be accessed. This study demonstrates the versatility of ancestral sequence reconstruction combined with enzyme engineering as a valuable tool in chemical biology.

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2021)

Article Chemistry, Medicinal

Lead derivatization of ethyl 6-bromo-2-((dimethylamino)methyl)-5-hydroxy-1-phenyl-1H-indole-3-carboxylate and 5-bromo-2-(thiophene-2-carboxamido) benzoic acid as FabG inhibitors targeting ESKAPE pathogens

Saiprasad Dasugari Varakala, Rudraraju Srilakshmi Reshma, Robert Schnell, Sriram Dharmarajan

Summary: This study focuses on the lead expansion of two hit molecules, resulting in the discovery of 43 analogues. Compounds 15 and 19 exhibit broad-spectrum inhibition activity against FabG.

EUROPEAN JOURNAL OF MEDICINAL CHEMISTRY (2022)

Review Immunology

Mycobacterium tuberculosis KasA as a drug target: Structure-based inhibitor design

Reshma S. Rudraraju, Samer S. Daher, Ricardo Gallardo-Macias, Xin Wang, Matthew B. Neiditch, Joel S. Freundlich

Summary: This review summarizes the current research progress on the druggable target KasA in Mycobacterium tuberculosis, focusing on structure-based design methods using X-ray crystal structures. The discussed inhibitor classes and their interactions with KasA provide insights into the development of new KasA inhibitors for studying the basic biology of M. tuberculosis and combating drug-sensitive and drug-resistant infections.

FRONTIERS IN CELLULAR AND INFECTION MICROBIOLOGY (2022)

Article Chemistry, Medicinal

Profiling of in vitro activities of urea-based inhibitors against cysteine synthases from Mycobacterium tuberculosis

Katharina Brunner, Eva Maria Steiner, Rudraraju Srilakshmi Reshma, Dharmarajan Sriram, Robert Schnell, Gunter Schneider

BIOORGANIC & MEDICINAL CHEMISTRY LETTERS (2017)

Article Chemistry, Medicinal

A robust synthesis of functionalized 2H-indazoles via solid state melt reaction (SSMR) and their anti-tubercular activity

Shinde Vidyacharan, Chandan Adhikari, Vagolu Siva Krishna, Rudraraju Srilakshmi Reshma, Dharmarajan Sriram, Duddu S. Sharada

BIOORGANIC & MEDICINAL CHEMISTRY LETTERS (2017)

No Data Available