Network-based hierarchical population structure analysis for large genomic data sets

On the post-glacial spread of human commensal Arabidopsis thaliana : journey to the east

(2019) Che-Wei Hsu et al.   NEW PHYTOLOGIST

Insights into Platypus Population Structure and History from Whole-Genome Sequencing

(2018) Hilary C Martin et al.   MOLECULAR BIOLOGY AND EVOLUTION

Application of network methods for understanding evolutionary dynamics in discrete habitats

(2017) Gili Greenbaum et al.   MOLECULAR ECOLOGY

African genomes illuminate the early history and transition to selfing inArabidopsis thaliana

(2017) Arun Durvasula et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

On the post-glacial spread of human commensal Arabidopsis thaliana

(2017) Cheng-Ruei Lee et al.   Nature Communications

Clustering of 770,000 genomes reveals post-colonial population structure of North America

(2017) Eunjung Han et al.   Nature Communications

CONE: Community Oriented Network Estimation Is a Versatile Framework for Inferring Population Structure in Large-Scale Sequencing Data

(2017) Markku O. Kuismin et al.   G3-Genes Genomes Genetics

1,135 Genomes Reveal the Global Pattern of Polymorphism in Arabidopsis thaliana

(2016) Carlos Alonso-Blanco et al.   CELL

Recent advances in the study of fine-scale population structure in humans

(2016) John Novembre et al.   CURRENT OPINION IN GENETICS & DEVELOPMENT

Inference and Analysis of Population Structure Using Genetic Data and Network Theory

(2016) G. Greenbaum et al.   GENETICS

Scaling probabilistic models of genetic variation to millions of humans

(2016) Prem Gopalan et al.   NATURE GENETICS

Eigenanalysis of SNP data with an identity by descent interpretation

(2016) Xiuwen Zheng et al.   THEORETICAL POPULATION BIOLOGY

On the Apportionment of Population Structure

(2016) Yaron Granot et al.   PLoS One

A Comparative Analysis of Community Detection Algorithms on Artificial Networks

(2016) Zhao Yang et al.   Scientific Reports

The apportionment of human diversity revisited

(2015) Keith L. Hunley et al.   AMERICAN JOURNAL OF PHYSICAL ANTHROPOLOGY

Probabilistic models of genetic variation in structured populations applied to global human studies

(2015) Wei Hao et al.   BIOINFORMATICS

A global reference for human genetic variation

(2015) Richard A. Gibbs et al.   NATURE

50 years of Arabidopsis research: highlights and future directions

(2015) Nicholas J. Provart et al.   NEW PHYTOLOGIST

Salinity Is an Agent of Divergent Selection Driving Local Adaptation of Arabidopsis to Coastal Habitats

(2015) Silvia Busoms et al.   PLANT PHYSIOLOGY

Century-scale Methylome Stability in a Recently Diverged Arabidopsis thaliana Lineage

(2015) Jörg Hagmann et al.   PLoS Genetics

Fast and Efficient Estimation of Individual Ancestry Coefficients

(2014) Eric Frichot et al.   GENETICS

fastSTRUCTURE: Variational Inference of Population Structure in Large SNP Data Sets

(2014) Anil Raj et al.   GENETICS

Keeping It Local: Evidence for Positive Selection in Swedish Arabidopsis thaliana

(2014) Christian D. Huber et al.   MOLECULAR BIOLOGY AND EVOLUTION

Inferring Admixture Histories of Human Populations Using Linkage Disequilibrium

(2013) P.-R. Loh et al.   GENETICS

Massive genomic variation and strong selection in Arabidopsis thaliana lines from Sweden

(2013) Quan Long et al.   NATURE GENETICS

Separation of the largest eigenvalues in eigenanalysis of genotype data from discrete subpopulations

(2013) Katarzyna Bryc et al.   THEORETICAL POPULATION BIOLOGY

Population Identification Using Genetic Data

(2012) Daniel John Lawson et al.   Annual Review of Genomics and Human Genetics

A Population-Genetic Perspective on the Similarities and Differences among Worldwide Human Populations

(2012) Noah A. Rosenberg   HUMAN BIOLOGY

Genome-wide patterns of genetic variation in worldwide Arabidopsis thaliana accessions from the RegMap panel

(2012) Matthew W Horton et al.   NATURE GENETICS

Inference of Population Splits and Mixtures from Genome-Wide Allele Frequency Data

(2012) Joseph K. Pickrell et al.   PLoS Genetics

Inference of Population Structure using Dense Haplotype Data

(2012) Daniel John Lawson et al.   PLoS Genetics

Haploscope: a tool for the graphical display of haplotype structure in populations

(2011) F. Anthony San Lucas et al.   GENETIC EPIDEMIOLOGY

A Map of Local Adaptation in Arabidopsis thaliana

(2011) A. Fournier-Level et al.   SCIENCE

Discriminant analysis of principal components: a new method for the analysis of genetically structured populations

(2010) Thibaut Jombart et al.   BMC GENETICS

Multi-locus inference of population structure: a comparison between single nucleotide polymorphisms and microsatellites

(2010) R J Haasl et al.   HEREDITY

Genomics and the future of conservation genetics

(2010) Fred W. Allendorf et al.   NATURE REVIEWS GENETICS

Association mapping of local climate-sensitive quantitative trait loci in Arabidopsis thaliana

(2010) Y. Li et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Scale of Population Structure in Arabidopsis thaliana

(2010) Alexander Platt et al.   PLoS Genetics

mStruct: Inference of Population Structure in Light of Both Genetic Admixing and Allele Mutations

(2009) S. Shringarpure et al.   GENETICS

Fast model-based estimation of ancestry in unrelated individuals

(2009) D. H. Alexander et al.   GENOME RESEARCH

Genetic markers in the playground of multivariate analysis

(2009) T Jombart et al.   HEREDITY

Statistical methods in spatial genetics

(2009) GILLES GUILLOT et al.   MOLECULAR ECOLOGY

Assessing statistical power of SNPs for population structure and conservation studies

(2009) PHILLIP A. MORIN et al.   Molecular Ecology Resources

Inferring weak population structure with the assistance of sample group information

(2009) MELISSA J. HUBISZ et al.   Molecular Ecology Resources

Genetics in geographically structured populations: defining, estimating and interpreting FST

(2009) Kent E. Holsinger et al.   NATURE REVIEWS GENETICS

Detecting the overlapping and hierarchical community structure in complex networks

(2009) Andrea Lancichinetti et al.   NEW JOURNAL OF PHYSICS

Epigenetic factors in aging and longevity

(2009) Silvia Gravina et al.   PFLUGERS ARCHIV-EUROPEAN JOURNAL OF PHYSIOLOGY

Community detection in graphs

(2009) Santo Fortunato   PHYSICS REPORTS-REVIEW SECTION OF PHYSICS LETTERS

Enhanced Bayesian modelling in BAPS software for learning genetic structures of populations

(2008) Jukka Corander et al.   BMC BIOINFORMATICS

Fast unfolding of communities in large networks

(2008) Vincent D Blondel et al.   JOURNAL OF STATISTICAL MECHANICS-THEORY AND EXPERIMENT

Genotype, haplotype and copy-number variation in worldwide human populations

(2008) Mattias Jakobsson et al.   NATURE

Network analysis identifies weak and strong links in a metapopulation system

(2008) A. F. Rozenfeld et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Worldwide Human Relationships Inferred from Genome-Wide Patterns of Variation

(2008) J. Z. Li et al.   SCIENCE

Demographic History of European Populations of Arabidopsis thaliana

(2008) Olivier François et al.   PLoS Genetics